Hg_chrom4_TN10mRNA_7285
Organism: Heterodera glycines Gene Locus: chr4:2601096-2606688 Feature type: polypeptideProtein Sequence
Length: 753
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.096 | 0.865 | 0.893 | 0.458 | 1.483 | 1.6 | 0.759 | 0.73 | 0.59 | 0.7 | 1.529 | 1.25 | 0.848 | 1.277 | 1.491 | 1.024 | 1.023 | 0.785 | 0.817 | 0.273 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6895
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKSK,EEKPKKRQKRPAK,KKMPLEQRKEKPKRA,RREAVPNMTVKRRSA,KRPAKRTEDEEEKQEKK,KRPAKLTEDEEEKQEKK,KRFGAHIRLFDTAKWRKV,KRADGGGESGGKTVRKARP,KRSATWRREAVPNMTVKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.342
|
0.117
|
0.047
|
0.662
|
0.064
|
0.266
|
0.201
|
0.055
|
0.361
|
0.183
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008322
|
1.000
|
1.000
|
Hsc_gene_707.t1
|
— | — | — |
KAI1723602.1 N-glycosidase [Ditylenchus destructor]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.956|GO:0003674_0.861|GO:0008152_0.759|GO:1901135_0.675|GO:0003824_0.674|GO:0016787_0.674|GO:0016798_0.650|GO:0016799_0.650
|
IPR012816+568-716_569-717_571-715+|IPR037238+562-727_571-718+
|
— |
PF08719+569-717+NADAR_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-554;753-753
|
1.000
|
555-752
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.864
|
83769.310
|
10.096
|
32.500
|
32.669
|
6.507
|
56.042
|
43.958
|
18.858
|
13.811
|
50.996
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1455.615
|
5408.680
|
1183.504
|
1037.315
|
1259.131
|
1032.089
|
1636.180
|
835.339
|
729.406
|
1174.174
|
983.559
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.422
|
-2.520
|
— |
0.248
|
-0.273
|
0.675
|
-0.408
|
1.112
|
— | — | — | — | — |
No JSON data available for plots.