Hg_chrom4_TN10mRNA_7286
Organism: Heterodera glycines Gene Locus: chr4:2733222-2734564 Feature type: polypeptideProtein Sequence
Length: 182
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.278 | 1.199 | 1.326 | 0.733 | 0.704 | 0.523 | 1.374 | 1.587 | 1.411 | 0.666 | 1.293 | 2.137 | 0.951 | 1.682 | 0.392 | 0.901 | 0.916 | 0.423 | 0.646 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6896
|
— | — |
1.444
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.123
|
0.332
|
0.026
|
0.115
|
0.246
|
0.271
|
0.436
|
0.034
|
0.696
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003123
|
2.000
|
1.000
|
Hsc_gene_14095.t1
|
Hsc_gene_14095.t1
|
— |
H2L0G5.1 Protein patched homolog 3 [Caenorhabditis elegans]
|
KAI6242632.1 Protein patched-like protein 1 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.932|GO:0005575_0.698|GO:0110165_0.698|GO:0032501_0.689|GO:0009987_0.625|GO:0016020_0.602|GO:0065007_0.569|GO:0050789_0.552|GO:0071944_0.547|GO:0050794_0.538|GO:0005886_0.529
|
IPR000731+1-81+|IPR053958+1-93+
|
— |
PF12349+1-93+Sterol-sensing_domain_of_SREBP_cleavage-activation
|
— |
PTHR46022+1-140+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-182
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.646
|
20897.310
|
8.166
|
5.500
|
26.374
|
13.187
|
42.857
|
57.143
|
15.385
|
10.989
|
47.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
96.233
|
121.097
|
80.041
|
48.928
|
41.167
|
32.529
|
35.670
|
62.779
|
211.276
|
104.233
|
150.109
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.828
|
-1.445
|
-0.600
|
— | — | — |
0.851
|
-0.678
|
— | — | — |
9.440
|
— |
No JSON data available for plots.