Hg_chrom4_TN10mRNA_7288
Organism: Heterodera glycines Gene Locus: chr4:2736986-2740541 Feature type: polypeptideProtein Sequence
Length: 656
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.223 | 0.993 | 0.527 | 0.421 | 0.889 | 1.094 | 0.49 | 0.991 | 0.847 | 1.112 | 0.716 | 1.435 | 0.635 | 1.407 | 1.618 | 2.003 | 1.399 | 0.624 | 0.469 | 0.404 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6898
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.634
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKSK,KAARRRPPPPPPK
|
51-72
|
0.982
|
— | — | — | — |
0.000
|
— | — |
0.230
|
0.149
|
0.029
|
0.703
|
0.078
|
0.082
|
0.197
|
0.140
|
0.309
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003770
|
2.000
|
1.000
|
Hsc_gene_9848.t1
|
Hsc_gene_9847.t1
|
— | — |
KAI1713173.1 serine/threonine-protein phosphatase 4 regulatory subunit 4 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.683|GO:0110165_0.680|GO:0008150_0.627|GO:0005622_0.612
|
IPR011989+3-183+|IPR016024+6-181+|IPR039918+4-526+
|
— | — | — |
PTHR21467+4-526+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
196-656
|
1.000
|
1-195
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.935
|
71125.260
|
10.626
|
35.500
|
22.866
|
6.250
|
53.963
|
46.037
|
14.634
|
8.232
|
57.012
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
748.301
|
376.924
|
537.479
|
542.154
|
249.342
|
354.664
|
487.890
|
1515.623
|
34.710
|
1723.756
|
999.879
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.285
|
0.387
|
— |
-1.153
|
0.522
|
0.470
|
1.994
|
-1.494
|
-5.766
|
4.177
|
— | — | — |
No JSON data available for plots.