Hg_chrom4_TN10mRNA_7299
Organism: Heterodera glycines Gene Locus: chr4:2847488-2853589 Feature type: polypeptideProtein Sequence
Length: 449
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.984 | 1.657 | 1.012 | 0.845 | 0.928 | 1.085 | 0.557 | 1.336 | 1.287 | 1.144 | 0.81 | 2.096 | 1.299 | 0.728 | 1.045 | 0.923 | 0.694 | 1.012 | 0.685 | 1.245 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6908
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.512
|
0.259
|
0.010
|
0.626
|
0.102
|
0.227
|
0.131
|
0.009
|
0.232
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003772
|
1.000
|
2.000
|
Hsc_gene_8911.t1;Hsc_gene_8911.t2
|
— | — |
Q9BX70.1 BTB/POZ domain-containing protein 2 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.729|GO:0110165_0.716|GO:0008150_0.664|GO:0005622_0.611|GO:0043226_0.538|GO:0005737_0.536
|
IPR000210+14-127_21-100_21-131+|IPR008974+281-428+|IPR011333+1-158_5-126+|IPR011705+134-246_142-212+
|
SM00225+21-131+|SM00875+134-246+
|
PF00651+14-127+BTB/POZ_domain|PF07707+142-212+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+5-287+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-449
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
50905.130
|
6.899
|
3.000
|
24.276
|
12.472
|
46.325
|
53.675
|
13.140
|
11.136
|
49.443
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
82.449
|
300.033
|
229.356
|
59.132
|
25.333
|
19.548
|
38.328
|
65.576
|
30.814
|
61.113
|
48.128
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.617
|
-2.480
|
-1.847
|
-1.250
|
— |
0.979
|
1.649
|
-0.637
|
— | — | — | — | — |
No JSON data available for plots.