Hg_chrom4_TN10mRNA_7300
Organism: Heterodera glycines Gene Locus: chr4:2861988-2865205 Feature type: polypeptideProtein Sequence
Length: 422
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.937 | 0.937 | 1.206 | 0.981 | 1.224 | 1.215 | 0.621 | 1.066 | 1.79 | 1.281 | 0.61 | 1.394 | 1.975 | 0.638 | 1.161 | 0.812 | 0.66 | 0.754 | 1.641 | 0.627 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6909
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.520
|
0.174
|
0.018
|
0.656
|
0.148
|
0.321
|
0.116
|
0.007
|
0.187
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008324
|
1.000
|
1.000
|
Hsc_gene_8910.t1
|
— | — |
A9JRD8.2 BTB/POZ domain-containing protein 6-A [Danio rerio]
|
KAI3415282.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.730|GO:0005575_0.721|GO:0110165_0.700|GO:0005622_0.614|GO:0009987_0.563
|
IPR000210+13-120_19-94_19-125+|IPR002083+280-417_283-416+|IPR008974+273-422+|IPR011333+1-152_3-120+|IPR011705+129-239_132-237+
|
SM00225+19-125+|SM00875+129-239+
|
PF00651+13-120+BTB/POZ_domain|PF07707+132-237+BTB_And_C-terminal_Kelch|PF22486+283-416+MATH_domain
|
G3DSA:1.25.40.420:FF:000008+151-257+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+3-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-422
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
48312.280
|
4.752
|
-13.500
|
25.829
|
13.507
|
44.313
|
55.687
|
11.848
|
13.981
|
44.787
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
70.030
|
40.378
|
71.348
|
83.739
|
109.990
|
89.772
|
184.805
|
30.871
|
4.146
|
74.181
|
44.166
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.587
|
0.915
|
0.343
|
0.361
|
-0.278
|
1.052
|
-1.646
|
2.725
|
— |
4.604
|
— | — | — |
No JSON data available for plots.