Hg_chrom4_TN10mRNA_7301
Organism: Heterodera glycines Gene Locus: chr4:2868262-2871355 Feature type: polypeptideProtein Sequence
Length: 328
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.532 | 1.418 | 1.22 | 1.472 | 0.711 | 1.251 | 0.436 | 1.22 | 1.491 | 1.03 | 1.34 | 2.152 | 1.863 | 1.114 | 0.809 | 0.784 | 0.8 | 0.878 | 0.235 | 0.986 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6910
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — |
7-39
|
0.997
|
— | — |
0.000
|
— | — |
0.249
|
0.159
|
0.011
|
0.428
|
0.422
|
0.324
|
0.276
|
0.003
|
0.160
|
0.552
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003773
|
1.000
|
2.000
|
Hsc_gene_8909.t1;Hsc_gene_8909.t2
|
— | — | — |
KAK2094557.1 E3 ubiquitin-protein ligase mib1 [Saguinus oedipus]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0061630
|
— |
IPR013083+212-257_258-311+|IPR045194+218-259+
|
— |
PF13920+216-255_264-295+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR22996+218-259+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-328
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
37754.780
|
8.252
|
10.000
|
26.220
|
12.805
|
47.561
|
52.439
|
15.244
|
10.976
|
47.256
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
944.495
|
14.036
|
589.490
|
422.729
|
47.890
|
6.472
|
6.480
|
15.865
|
4424.628
|
400.086
|
2124.890
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.166
|
4.778
|
-0.371
|
-3.179
|
-2.872
|
— | — | — |
3.375
|
-3.217
|
— | — | — |
No JSON data available for plots.