Hg_chrom4_TN10mRNA_7302
Organism: Heterodera glycines Gene Locus: chr4:2872351-2875725 Feature type: polypeptideProtein Sequence
Length: 205
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.681 | 1.248 | 1.064 | 0.841 | 1.626 | 1.876 | 0.348 | 0.732 | 0.759 | 1.582 | 1.035 | 1.148 | 1.626 | 0.75 | 0.796 | 1.394 | 0.64 | 0.887 | 1.126 | 0.143 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6911
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.825
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.605
|
0.181
|
0.057
|
0.704
|
0.053
|
0.108
|
0.080
|
0.006
|
0.073
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008325
|
1.000
|
1.000
|
Hsc_gene_8908.t1
|
Hsc_gene_8908.t1
|
— |
Q9M1X5.1 SKP1-like protein 13 [Arabidopsis thaliana]
|
KAH7716576.1 Protein SKR-1 protein [Aphelenchus avenae]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511
|
GO:0008150_0.873|GO:0009987_0.730|GO:0065007_0.657|GO:0050789_0.642|GO:0005575_0.623|GO:0110165_0.618|GO:0050794_0.585|GO:0005622_0.558|GO:0050896_0.547|GO:0051716_0.528
|
IPR001232+38-153+|IPR011333+35-202+|IPR016072+156-201+|IPR016897+18-203_41-200+|IPR036296+126-201+
|
SM00512+38-153+
|
PF01466+156-201+Skp1_family,_dimerisation_domain
|
— |
PTHR11165+41-200+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-205
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
23362.380
|
4.588
|
-8.500
|
27.805
|
9.268
|
54.146
|
45.854
|
12.195
|
15.610
|
45.854
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
saddlebrown
|
530.241
|
321.402
|
436.181
|
420.046
|
539.483
|
453.129
|
517.737
|
428.484
|
375.084
|
869.817
|
657.788
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.210
|
0.249
|
— |
0.329
|
-0.237
|
— | — |
0.415
|
— | — | — | — | — |
No JSON data available for plots.