SCN Proteipedia

Hg_chrom4_TN10mRNA_7311

Organism: Heterodera glycines Gene Locus: chr4:2974549-2995824 Feature type: polypeptide

Protein Sequence

Length: 2,081

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.939	0.805	0.673	0.497	0.817	1.491	0.749	1.225	1.292	1.37	0.648	2.233	1.775	0.702	1.255	0.968	0.882	1.085	1.183	0.82	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_6919	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	PKPS,RKMSLIVLQQQQRKKSL,RKLTTAVYGADVERRRSI,RKMSPGSPAQHSPVRYRKL	51-71	0.948	23-73	0.999	—	—	0.000	—	—	0.074	0.108	0.048	0.178	0.269	0.353	0.109	0.004	0.821	0.014

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000569	4.000	3.000	Hsc_gene_8900.t1;Hsc_gene_8900.t2;Hsc_gene_8900.t3	Hsc_gene_8900.t1;Hsc_gene_8900.t2;Hsc_gene_8900.t3	—	Q8IZF0.1 Sodium leak channel NALCN [Homo sapiens]	KAI1698131.1 ion transport protein domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005216\|GO:0005261\|GO:0006811\|GO:0016020\|GO:0055085	GO:0008150_0.978\|GO:0009987_0.942\|GO:0051179_0.930\|GO:0006810_0.926\|GO:0051234_0.926\|GO:0055085_0.878\|GO:0003674_0.868\|GO:0006811_0.854\|GO:0005215_0.843\|GO:0022857_0.843\|GO:0034220_0.836\|GO:0015267_0.835\|GO:0022803_0.835\|GO:0005216_0.832\|GO:0015075_0.832\|GO:0006812_0.820\|GO:0030001_0.820\|GO:0098660_0.813\|GO:0098655_0.801\|GO:0005261_0.791\|GO:0005575_0.791\|GO:0008324_0.791\|GO:0110165_0.791\|GO:0071944_0.783\|GO:0005886_0.780\|GO:0016020_0.780\|GO:0098662_0.775\|GO:0015318_0.628\|GO:0022890_0.607\|GO:0046873_0.607\|GO:0065007_0.590\|GO:0006816_0.555\|GO:0070588_0.539	IPR005821+221-469_525-746_1091-1371_1421-1686+\|IPR027359+197-303_514-635_1087-1218_1412-1563+\|IPR028823+231-1905+	—	PF00520+221-469_525-746_1091-1371_1421-1686+Ion_transport_protein	G3DSA:1.10.287.70:FF:000060+1298-1398+Sodium_leak_channel_non-selective_protein\|G3DSA:1.10.287.70:FF:000061+1549-1679+Sodium_leak_channel_non-selective_protein\|G3DSA:1.20.120.350:FF:000030+515-633+sodium_leak_channel_non-selective_protein	PTHR46141+231-1905+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-149;888-1021;1904-2081	2.000	150-887;1022-1903	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.741	235355.880	9.315	63.500	21.480	13.167	42.912	57.088	12.878	8.602	45.939

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	1826.414	738.763	1480.352	703.160	262.326	274.164	181.027	435.216	306.172	6232.805	3692.820

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.774	-0.208	-0.966	-1.454	—	-0.590	0.564	-1.125	-4.432	—	-4.086	—	—

No JSON data available for plots.

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