Hg_chrom4_TN10mRNA_7313
Organism: Heterodera glycines Gene Locus: chr4:2974549-2995826 Feature type: polypeptideProtein Sequence
Length: 2,114
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.946 | 0.836 | 0.671 | 0.489 | 0.812 | 1.468 | 0.743 | 1.206 | 1.293 | 1.374 | 0.645 | 2.254 | 1.774 | 0.691 | 1.245 | 0.953 | 0.876 | 1.111 | 1.201 | 0.835 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6919
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
PKPS,RKMSLIVLQQQQRKKSL,RKLTTAVYGADVERRRSI,RKMSPGSPAQHSPVRYRKL
|
51-71
|
0.948
|
23-73
|
0.999
|
— | — |
0.000
|
— | — |
0.074
|
0.113
|
0.050
|
0.178
|
0.290
|
0.356
|
0.116
|
0.004
|
0.824
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000569
|
4.000
|
3.000
|
Hsc_gene_8900.t1;Hsc_gene_8900.t2;Hsc_gene_8900.t3
|
Hsc_gene_8900.t1;Hsc_gene_8900.t2;Hsc_gene_8900.t3
|
— |
Q8IZF0.1 Sodium leak channel NALCN [Homo sapiens]
|
KAI1698131.1 ion transport protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0005261|GO:0006811|GO:0016020|GO:0055085
|
GO:0008150_0.979|GO:0009987_0.942|GO:0051179_0.932|GO:0006810_0.926|GO:0051234_0.926|GO:0055085_0.879|GO:0003674_0.871|GO:0006811_0.857|GO:0005215_0.848|GO:0022857_0.848|GO:0015267_0.841|GO:0022803_0.841|GO:0034220_0.840|GO:0005216_0.837|GO:0015075_0.837|GO:0006812_0.822|GO:0030001_0.822|GO:0098660_0.815|GO:0098655_0.802|GO:0005261_0.793|GO:0008324_0.793|GO:0005575_0.790|GO:0110165_0.790|GO:0071944_0.782|GO:0005886_0.780|GO:0016020_0.780|GO:0098662_0.777|GO:0015318_0.631|GO:0022890_0.609|GO:0046873_0.609|GO:0065007_0.590|GO:0006816_0.554|GO:0070588_0.538
|
IPR005821+205-502_558-779_1124-1404_1454-1719+|IPR027359+191-332_547-668_1120-1251_1444-1593+|IPR028823+188-1938+
|
— |
PF00520+205-502_558-779_1124-1404_1454-1719+Ion_transport_protein
|
G3DSA:1.10.287.70:FF:000060+1331-1431+Sodium_leak_channel_non-selective_protein|G3DSA:1.10.287.70:FF:000061+1582-1712+Sodium_leak_channel_non-selective_protein|G3DSA:1.20.120.350:FF:000030+548-666+sodium_leak_channel_non-selective_protein
|
PTHR46141+188-1938+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-149;921-1054;1937-2114
|
2.000
|
150-920;1055-1936
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.737
|
239126.390
|
9.305
|
63.500
|
21.334
|
13.198
|
42.668
|
57.332
|
12.772
|
8.562
|
46.026
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1826.414
|
738.763
|
1480.352
|
703.160
|
262.326
|
274.164
|
181.027
|
435.216
|
306.172
|
6232.805
|
3692.820
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
-0.208
|
-0.966
|
-1.454
|
— |
-0.590
|
0.564
|
-1.125
|
-4.432
|
— |
-4.086
|
— | — |
No JSON data available for plots.