SCN Proteipedia

Hg_chrom4_TN10mRNA_7321

Organism: Heterodera glycines Gene Locus: chr4:3032457-3038701 Feature type: polypeptide

Protein Sequence

Length: 736

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.027	1.359	0.84	0.328	0.657	1.115	0.631	1.427	1.117	1.028	0.721	1.758	1.245	1.411	1.137	1.3	0.935	0.762	1.359	1.159	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_6927	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.536

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.009	—	—	0.052	0.099	0.025	0.126	0.198	0.158	0.232	0.024	0.813	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008327	1.000	1.000	Hsc_gene_8945.t1	Hsc_gene_17971.t1;Hsc_gene_8945.t1	—	Q09453.2 Glycine receptor subunit beta-type 4 [Caenorhabditis elegans]	KAI3413324.1 Neurotransmitter-gated ion-channel transmembrane region [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0008150_0.974\|GO:0009987_0.950\|GO:0005575_0.875\|GO:0110165_0.855\|GO:0065007_0.803\|GO:0051179_0.800\|GO:0016020_0.798\|GO:0006810_0.790\|GO:0051234_0.790\|GO:0050789_0.787\|GO:0003674_0.764\|GO:0071944_0.722\|GO:0050794_0.718\|GO:0005886_0.706\|GO:0055085_0.706\|GO:0023052_0.699\|GO:0006811_0.697\|GO:0007154_0.697\|GO:0034220_0.671\|GO:0007267_0.647\|GO:0032501_0.637\|GO:0005215_0.627\|GO:0022857_0.627\|GO:0050896_0.627\|GO:0022803_0.624\|GO:0005216_0.623\|GO:0015075_0.623\|GO:0015267_0.623\|GO:0030054_0.613\|GO:0051716_0.602\|GO:0007268_0.600\|GO:0045202_0.600\|GO:0098916_0.600\|GO:0099536_0.600\|GO:0099537_0.600\|GO:0022836_0.593\|GO:0007165_0.562\|GO:0015276_0.551\|GO:0022834_0.551\|GO:0065008_0.547\|GO:0003008_0.528\|GO:0098660_0.521\|GO:0005230_0.502	IPR006028+265-285_291-312_325-346_699-719+\|IPR006029+271-442+\|IPR006201+60-429_94-110_126-137_172-186_256-268+\|IPR006202+60-260+\|IPR018000+172-186+\|IPR036719+263-722+\|IPR036734+47-259_61-261+\|IPR038050+260-407+	—	PF02931+60-260+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+271-442+Neurotransmitter-gated_ion-channel_transmembrane_region	—	PTHR18945+60-429+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	375-673	2.000	1-374;674-736	7mly_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.909	82431.510	9.373	23.500	21.739	13.043	46.739	53.261	13.179	8.560	52.717

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	100.031	76.271	422.252	96.081	37.649	28.282	72.759	182.806	31.615	70.389	53.772

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.241	—	-2.028	-1.385	—	1.373	2.594	-1.190	—	—	—	—	—

No JSON data available for plots.

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