SCN Proteipedia

Hg_chrom4_TN10mRNA_7324

Organism: Heterodera glycines Gene Locus: chr4:3054461-3057371 Feature type: polypeptide

Protein Sequence

Length: 567

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.964	1.148	0.834	0.547	0.5	0.724	1.092	0.882	1.881	1.764	0.347	2.49	0.931	0.644	1.188	0.882	1.07	1.203	0.407	0.622	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_6930	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	6-Not_Clustered	0.907

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	25-51	0.882	—	—	—	—	0.000	—	—	0.042	0.167	0.025	0.097	0.194	0.565	0.191	0.008	0.786	0.053

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008329	1.000	1.000	Hsc_gene_8938.t1	Hsc_gene_8938.t1	—	Q10901.2 Excitatory amino acid transporter [Caenorhabditis elegans]	KAF7634332.1 Amino acid transporter [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0015293\|GO:0016020	GO:0008150_0.961\|GO:0009987_0.889\|GO:0006810_0.838\|GO:0051179_0.838\|GO:0051234_0.838\|GO:0005575_0.823\|GO:0110165_0.823\|GO:0003674_0.805\|GO:0055085_0.783\|GO:0016020_0.711\|GO:0071944_0.708\|GO:0071705_0.705\|GO:0015711_0.696\|GO:0015849_0.687\|GO:0046942_0.686\|GO:0005215_0.679\|GO:0022857_0.679\|GO:1903825_0.669\|GO:1905039_0.669\|GO:0006865_0.664\|GO:0003333_0.662\|GO:0005886_0.659\|GO:0015807_0.656\|GO:1902475_0.656\|GO:0006835_0.617\|GO:0015800_0.599\|GO:0008514_0.592\|GO:0005342_0.586\|GO:0046943_0.586\|GO:0015171_0.582\|GO:0015179_0.576\|GO:0006811_0.530\|GO:0015172_0.525\|GO:0034220_0.525\|GO:0015813_0.509\|GO:0051938_0.509	IPR001991+32-477+\|IPR018107+373-396+\|IPR036458+23-486_31-477+\|IPR050746+22-490+	—	PF00375+32-477+Sodium:dicarboxylate_symporter_family	—	PTHR11958+22-490+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	532-567	1.000	1-531	9bh0_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.769	61239.780	8.052	8.000	17.460	7.760	37.919	62.081	9.877	7.584	52.557

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	darkorange	325.003	122.363	217.129	640.494	455.853	401.730	246.501	869.275	192.461	170.037	179.647

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.600	2.251	1.668	-0.521	—	-0.697	1.018	-1.681	—	—	—	—	—

No JSON data available for plots.

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