Hg_chrom4_TN10mRNA_7333
Organism: Heterodera glycines Gene Locus: chr4:3106163-3107851 Feature type: polypeptideProtein Sequence
Length: 385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 1.027 | 1.086 | 0.448 | 1.429 | 0.799 | 0.402 | 1.299 | 1.847 | 1.018 | 1.417 | 0.917 | 1.732 | 0.899 | 0.901 | 0.928 | 1.192 | 0.59 | 1.199 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6937
|
— | — |
1.444
|
1.000
|
2.000
|
2.000
|
— |
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKAIIDGLNKRMEEKKDAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.773
|
0.166
|
0.027
|
0.258
|
0.137
|
0.135
|
0.090
|
0.035
|
0.095
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008334
|
2.000
|
0.000
|
0.000
|
Hsc_gene_2839.t1;Hsc_gene_2840.t1
|
— |
Q80WQ9.1 Zinc finger BED domain-containing protein 4 [Mus musculus]
|
XP_065892841.1 zinc finger BED domain-containing protein 4-like [Dysidea avara]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0005575_0.911|GO:0110165_0.907|GO:0003674_0.856|GO:0005622_0.856|GO:0016020_0.813|GO:0043226_0.802|GO:0005737_0.790|GO:0043229_0.785|GO:0005488_0.781|GO:0043227_0.750|GO:0043231_0.743|GO:0005515_0.741|GO:0042802_0.671|GO:0005634_0.640|GO:0031974_0.582|GO:0043233_0.582|GO:0070013_0.582|GO:0031981_0.579|GO:0008150_0.575|GO:0005654_0.561|GO:0009987_0.516
|
IPR003656+1-50_2-44+|IPR012337+178-308+|IPR036236+2-51+|IPR052717+17-174+
|
— |
PF02892+2-44+BED_zinc_finger
|
— |
PTHR46169+17-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-385
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
44087.330
|
6.828
|
2.000
|
30.909
|
12.208
|
52.208
|
47.792
|
16.364
|
14.545
|
44.935
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
132.801
|
46.789
|
61.456
|
62.662
|
53.524
|
72.077
|
15.027
|
41.795
|
13.981
|
438.022
|
256.290
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-2.252
|
-0.897
|
-1.333
|
— | — | — | — | — |
No JSON data available for plots.