Hg_chrom4_TN10mRNA_7334
Organism: Heterodera glycines Gene Locus: chr4:3115724-3132260 Feature type: polypeptideProtein Sequence
Length: 2,003
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.637 | 1.939 | 0.381 | 0.155 | 0.433 | 4.109 | 1.248 | 1.598 | 0.732 | 0.816 | 0.197 | 1.733 | 0.402 | 0.864 | 0.489 | 1.205 | 1.105 | 0.749 | 0.077 | 0.176 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6938
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PDAKRLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.920
|
0.107
|
0.006
|
0.383
|
0.060
|
0.027
|
0.018
|
0.033
|
0.094
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001262
|
1.000
|
4.000
|
Hsc_gene_8922.t1;Hsc_gene_8922.t2;Hsc_gene_8922.t3;Hsc_gene_8922.t4
|
Hsc_gene_8922.t4
|
— | — |
KAH7717164.1 CRE-SCD-1 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR053019+580-1148+
|
— | — | — |
PTHR23353+580-1148+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-438;512-617;713-1513;1702-2003
|
3.000
|
439-511;618-712;1514-1701
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.889
|
206730.820
|
6.835
|
12.000
|
11.583
|
5.342
|
51.123
|
48.877
|
6.890
|
4.693
|
60.060
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3771.405
|
3660.355
|
4183.854
|
2273.276
|
1460.595
|
2863.493
|
1129.851
|
3701.467
|
10284.225
|
1559.395
|
5298.608
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.825
|
-0.772
|
-0.670
|
0.986
|
-1.333
|
— |
-1.573
|
2.619
|
-1.997
|
— | — | — |
No JSON data available for plots.