Hg_chrom4_TN10mRNA_7335
Organism: Heterodera glycines Gene Locus: chr4:3163057-3170607 Feature type: polypeptideProtein Sequence
Length: 442
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.658 | 0.947 | 1.028 | 1.17 | 0.867 | 1.508 | 0.539 | 1.357 | 1.458 | 1.04 | 1.097 | 1.464 | 1.634 | 0.74 | 1.154 | 0.873 | 0.927 | 1.063 | 0.87 | 1.065 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6939
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
cytoplasm|mitochondrion
|
— | — | — | — |
11-33
|
0.831
|
— | — |
0.000
|
— | — |
0.116
|
0.755
|
0.046
|
0.548
|
0.150
|
0.118
|
0.283
|
0.012
|
0.153
|
0.406
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003776
|
2.000
|
1.000
|
Hsc_gene_14261.t1
|
— | — |
Q12458.1 Putative reductase 1 [Saccharomyces cerevisiae S288C]
|
KAI1730916.1 aldo/keto reductase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.799|GO:0003674_0.741|GO:0005575_0.741|GO:0110165_0.734|GO:0005622_0.657|GO:0003824_0.645|GO:0005737_0.601|GO:0008152_0.590|GO:0009987_0.578|GO:0044238_0.573|GO:0016020_0.552|GO:0016491_0.531|GO:0043226_0.507
|
IPR020471+78-328_108-132_230-247_264-293+|IPR023210+101-296+|IPR036812+71-371_81-347+
|
— |
PF00248+101-296+Aldo/keto_reductase_family
|
— |
PTHR43827+78-328+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-442
|
8aqg_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
50910.660
|
8.515
|
15.000
|
26.471
|
13.348
|
48.190
|
51.810
|
15.611
|
10.860
|
45.928
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
432.420
|
411.646
|
166.638
|
81.967
|
44.933
|
30.750
|
32.316
|
49.991
|
126.171
|
1490.367
|
905.712
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.536
|
-2.465
|
-0.914
|
-0.901
|
— | — | — | — |
-3.667
|
— |
-4.531
|
— | — |
No JSON data available for plots.