Hg_chrom4_TN10mRNA_7342
Organism: Heterodera glycines Gene Locus: chr4:3234567-3240244 Feature type: polypeptideProtein Sequence
Length: 358
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.974 | 0.715 | 1.067 | 0.193 | 0.745 | 0.716 | 0.632 | 2.793 | 1.304 | 1.925 | 0.508 | 0.986 | 1.552 | 1.182 | 1.14 | 0.758 | 0.916 | 0.846 | 1.934 | 0.739 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6946
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-30
|
0.909
|
0.971
|
0.000
|
0.000
|
0.180
|
0.267
|
0.009
|
0.256
|
0.563
|
0.347
|
0.145
|
0.021
|
0.155
|
0.479
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008338
|
1.000
|
1.000
|
Hsc_gene_9842.t1
|
Hsc_gene_9842.t1
|
— |
Q9NXS2.2 Glutaminyl-peptide cyclotransferase-like protein [Homo sapiens]
|
KAI1724042.1 peptidase family m28 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016603
|
GO:0003674_0.791|GO:0005575_0.749|GO:0110165_0.749|GO:0003824_0.719|GO:0016740_0.634|GO:0140096_0.601|GO:0016746_0.594|GO:0016020_0.586|GO:0016755_0.583|GO:0016603_0.578|GO:0008150_0.573|GO:0005622_0.544|GO:0005737_0.544
|
IPR007484+115-342+|IPR037457+49-346+|IPR040234+12-348+
|
— |
PF04389+115-342+Peptidase_family_M28
|
G3DSA:3.40.630.10:FF:000029+30-349+Glutaminyl-peptide_cyclotransferase
|
PTHR12283+12-348+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-358
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
40682.940
|
6.950
|
5.000
|
24.860
|
16.201
|
41.620
|
58.380
|
14.525
|
10.335
|
45.810
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
1027.062
|
385.707
|
1281.592
|
899.244
|
1206.002
|
1980.551
|
1750.311
|
2742.666
|
301.690
|
424.852
|
372.068
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.504
|
1.084
|
-0.404
|
0.391
|
0.730
|
-0.170
|
0.365
|
-0.507
|
— | — | — | — | — |