Hg_chrom4_TN10mRNA_7343
Organism: Heterodera glycines Gene Locus: chr4:3245157-3255503 Feature type: polypeptideProtein Sequence
Length: 953
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.013 | 0.927 | 0.801 | 0.76 | 1.032 | 1.856 | 0.637 | 1.259 | 1.119 | 1.078 | 0.795 | 1.852 | 1.545 | 1.049 | 1.413 | 0.675 | 0.826 | 1.113 | 0.646 | 0.617 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6947
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.722
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.498
|
0.213
|
0.053
|
0.508
|
0.220
|
0.239
|
0.096
|
0.004
|
0.211
|
0.110
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003778
|
2.000
|
1.000
|
Hsc_gene_9844.t1
|
Hsc_gene_9844.t1
|
— |
O04379.1 Protein argonaute 1 [Arabidopsis thaliana]
|
KAH7710290.1 piwi domain-containing protein [Aphelenchus avenae]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0005515
|
GO:0008150_0.919|GO:0005575_0.850|GO:0110165_0.841|GO:0009987_0.772|GO:0005622_0.768|GO:0065007_0.736|GO:0050789_0.714|GO:0008152_0.709|GO:0003674_0.698|GO:0016020_0.668|GO:0050794_0.667|GO:0043226_0.661|GO:0043170_0.655|GO:0043229_0.652|GO:0044237_0.621|GO:0005488_0.609|GO:0009058_0.605|GO:0044249_0.585|GO:0005737_0.583|GO:0009059_0.575|GO:0019222_0.565|GO:0010467_0.564|GO:0031323_0.564|GO:0060255_0.559|GO:0043227_0.551|GO:0009889_0.549|GO:0031326_0.547|GO:0010556_0.546|GO:0010468_0.544|GO:0043231_0.521|GO:0048519_0.515|GO:0044238_0.511|GO:0048523_0.502
|
IPR003100+259-373_262-396_278-380+|IPR003165+554-897_569-897+|IPR012337+543-894+|IPR036085+252-407+|IPR036397+645-946+
|
SM00949+262-396+|SM00950+554-897+
|
PF02170+278-380+PAZ_domain|PF02171+569-897+Piwi_domain
|
— |
PTHR22891+27-900+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-953
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
107912.130
|
8.711
|
27.000
|
25.289
|
11.018
|
46.275
|
53.725
|
14.690
|
10.598
|
47.219
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
saddlebrown
|
703.982
|
136.927
|
311.581
|
573.749
|
1688.287
|
1890.284
|
789.713
|
613.197
|
434.417
|
502.709
|
473.441
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.957
|
1.930
|
0.989
|
1.525
|
0.178
|
-1.250
|
-1.732
|
0.507
|
— | — | — | — | — |
No JSON data available for plots.