Hg_chrom4_TN10mRNA_7344
Organism: Heterodera glycines Gene Locus: chr4:3259853-3266270 Feature type: polypeptideProtein Sequence
Length: 387
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.691 | 1.442 | 0.658 | 0.802 | 1.464 | 0.994 | 0.492 | 1.421 | 0.746 | 1.327 | 2.114 | 1.52 | 1.077 | 0.745 | 0.896 | 0.517 | 0.805 | 0.744 | 2.982 | 0.912 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6948
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
LKKKP,KKLCKTFKELKKICR,KRLATDLWHWANKKEKKRA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.697
|
0.210
|
0.033
|
0.355
|
0.246
|
0.108
|
0.115
|
0.029
|
0.113
|
0.169
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003779
|
1.000
|
2.000
|
Hsc_gene_9845.t1;Hsc_gene_9845.t2
|
Hsc_gene_9845.t1;Hsc_gene_9845.t2
|
— | — |
KAI3413303.1 hypothetical protein GPALN_010801 [Globodera pallida]
|
KAJ3673888
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;369-387
|
1.000
|
7-368
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.539
|
45763.040
|
10.023
|
28.500
|
33.592
|
13.695
|
52.196
|
47.804
|
21.189
|
12.403
|
39.535
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
928.493
|
7.900
|
113.912
|
228.137
|
48.264
|
12.392
|
8.733
|
10.415
|
2572.440
|
1971.669
|
2229.142
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.623
|
4.717
|
1.110
|
-2.276
|
-1.946
|
— | — | — | — | — |
-5.130
|
— | — |
No JSON data available for plots.