Hg_chrom4_TN10mRNA_7345
Organism: Heterodera glycines Gene Locus: chr4:3271413-3277192 Feature type: polypeptideProtein Sequence
Length: 237
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.932 | 1.57 | 1.304 | 0.727 | 1.336 | 0.649 | 0.954 | 0.633 | 1.688 | 0.627 | 1.087 | 1.737 | 1.289 | 0.893 | 0.431 | 1.085 | 0.83 | 0.895 | 0.325 | 0.993 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6949
|
— | — |
0.556
|
1.000
|
1.000
|
1.000
|
— | — |
1.000
|
— |
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.614
|
0.450
|
0.016
|
0.519
|
0.078
|
0.034
|
0.066
|
0.004
|
0.134
|
0.131
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008339
|
1.000
|
1.000
|
Hsc_gene_2338.t1
|
— | — |
P0C1H7.1 Peptidyl-prolyl cis-trans isomerase A1 [Rhizopus delemar RA 99-880]
|
ODN06156.1 Peptidyl-prolyl cis-trans isomerase H [Orchesella cincta]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000413|GO:0003755
|
GO:0005575_0.774|GO:0110165_0.746|GO:0003674_0.636|GO:0005622_0.616|GO:0005737_0.604|GO:0008150_0.604|GO:0016020_0.567|GO:0003824_0.547|GO:0043226_0.541|GO:0043229_0.529|GO:0043227_0.518|GO:0043231_0.514
|
IPR002130+63-228_64-226_80-95_118-130_175-187_188-203+|IPR029000+49-233_53-229+
|
— |
PF00160+64-226+Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD
|
— |
PTHR11071+59-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-47
|
1.000
|
48-237
|
7f9o_d
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.541
|
25891.000
|
4.373
|
-12.500
|
25.738
|
9.705
|
47.679
|
52.321
|
10.549
|
15.190
|
55.274
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
magenta
|
129.835
|
98.775
|
103.665
|
89.483
|
132.217
|
96.418
|
259.673
|
92.092
|
28.497
|
219.536
|
137.662
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.279
|
— |
0.533
|
-0.443
|
1.440
|
— |
1.640
|
— | — | — | — | — |
No JSON data available for plots.