Hg_chrom4_TN10mRNA_7346
Organism: Heterodera glycines Gene Locus: chr4:3280627-3285266 Feature type: polypeptideProtein Sequence
Length: 1,012
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.517 | 0.735 | 0.826 | 1.67 | 2.306 | 1.064 | 0.788 | 1.532 | 0.615 | 0.654 | 1.213 | 1.221 | 1.372 | 0.931 | 1.896 | 0.988 | 1.102 | 0.539 | 0.38 | 0.262 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6950
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RKRK,RRKEGTVQHKRKREE,RRTTRPKQRNGNRNRTK,KRKREEEEETVQHKRKTG,RRHEKVKPTAEPMARKRTK,RRRAKLPKGHRRTTRPKQR,RREKMGNIFGKREHGRRRR,RRRKSGEEKHEEEEKSGRR,RKTGEEEEEEDETVQHKRK,MKRRKKTKRRKQKDKRRRSKRKKRRGNK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.178
|
0.078
|
0.011
|
0.224
|
0.062
|
0.037
|
0.156
|
0.005
|
0.231
|
0.910
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008340
|
1.000
|
1.000
|
Hsc_gene_2336.t1
|
Hsc_gene_9846.t1
|
— | — |
KAI1721775.1 lustrin, cysteine-rich repeated domain-containing protein [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
— |
IPR002223+173-237_175-236+|IPR006150+119-169_239-285_290-338_342-393_398-446_955-994+|IPR028150+121-169_241-285_291-338_343-392_399-446+|IPR036880+164-238_170-237+|IPR053014+344-466+
|
SM00131+173-237+|SM00289+119-169_239-285_290-338_342-393_398-446_955-994+
|
PF14625+121-169_241-285_291-338_343-392_399-446+Lustrin,_cysteine-rich_repeated_domain
|
— |
PTHR46339+344-466+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
449-881;1008-1012
|
2.000
|
1-448;882-1007
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.599
|
116335.910
|
6.725
|
4.500
|
38.735
|
9.387
|
59.684
|
40.316
|
20.356
|
18.379
|
45.652
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
697.358
|
26.730
|
30.669
|
1265.372
|
379.256
|
77.876
|
40.999
|
32.245
|
93.794
|
2285.666
|
1346.292
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.426
|
5.480
|
-1.769
|
-2.268
|
-0.915
|
-1.367
|
— |
-4.722
|
— | — | — |
5.401
|
No JSON data available for plots.