Hg_chrom4_TN10mRNA_7347
Organism: Heterodera glycines Gene Locus: chr4:3295488-3304229 Feature type: polypeptideProtein Sequence
Length: 1,063
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.17 | 1.072 | 0.821 | 0.876 | 1.098 | 1.399 | 0.403 | 1.082 | 1.171 | 1.475 | 0.827 | 1.273 | 0.732 | 1.104 | 1.267 | 1.438 | 0.864 | 0.727 | 0.579 | 0.415 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6951
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.970
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKSK,KAARRRPPPPPPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.268
|
0.114
|
0.018
|
0.697
|
0.120
|
0.155
|
0.207
|
0.116
|
0.350
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003770
|
2.000
|
1.000
|
Hsc_gene_9848.t1
|
Hsc_gene_2317.t1
|
— | — |
KAI1713173.1 serine/threonine-protein phosphatase 4 regulatory subunit 4 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.672|GO:0110165_0.671|GO:0008150_0.632|GO:0005622_0.604|GO:0003674_0.518
|
IPR000357+271-300+|IPR011989+60-734+|IPR016024+68-732+|IPR021133+231-265_271-308+|IPR039918+38-1026+
|
— |
PF02985+271-300+HEAT_repeat
|
— |
PTHR21467+38-1026+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-61;747-1063
|
1.000
|
62-746
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
117442.060
|
7.945
|
17.500
|
24.929
|
6.961
|
50.329
|
49.671
|
13.829
|
11.101
|
50.988
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightyellow
|
1117.933
|
612.616
|
710.759
|
669.469
|
299.363
|
449.932
|
486.434
|
1451.345
|
6.043
|
3131.456
|
1791.993
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-1.193
|
0.601
|
— |
1.586
|
-1.435
|
-9.212
|
7.041
|
-3.078
|
— | — |
No JSON data available for plots.