Hg_chrom4_TN10mRNA_7348
Organism: Heterodera glycines Gene Locus: chr4:3307406-3309630 Feature type: polypeptideProtein Sequence
Length: 308
(Signal peptide: 1-35)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 0.982 | 0.472 | 1.903 | 0.866 | 0.999 | 0.85 | 2.435 | 1.515 | 1.316 | 0.738 | 1.146 | 1.263 | 1.311 | 0.994 | 1.206 | 0.798 | 0.64 | 0.749 | 0.764 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6952
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-35
|
0.545
|
0.632
|
0.000
|
0.000
|
0.227
|
0.442
|
0.066
|
0.303
|
0.104
|
0.165
|
0.167
|
0.071
|
0.266
|
0.853
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008341
|
1.000
|
1.000
|
Hsc_gene_2319.t1
|
Hsc_gene_2319.t1
|
— |
O17861.1 GILT-like protein F37H8.5 [Caenorhabditis elegans]
|
KAI1727711.1 gamma interferon inducible lysosomal thiol reductase (GILT) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016671
|
GO:0005575_0.822|GO:0110165_0.822|GO:0008150_0.698|GO:0005622_0.623|GO:0005737_0.582|GO:0016020_0.521|GO:0065007_0.513
|
IPR004911+26-289_122-221+
|
— |
PF03227+122-221+Gamma_interferon_inducible_lysosomal_thiol_reductase_(GILT)
|
— |
PTHR13234+26-289+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-308
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.899
|
34227.540
|
8.164
|
13.500
|
22.403
|
12.987
|
43.831
|
56.169
|
14.610
|
7.792
|
49.675
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
465.996
|
102.302
|
191.300
|
603.997
|
743.285
|
1263.874
|
1568.008
|
675.797
|
1.382
|
106.984
|
61.726
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
2.426
|
1.767
|
0.268
|
0.781
|
0.319
|
-1.011
|
1.355
|
-6.469
|
9.106
|
— | — | — |