Hg_chrom4_TN10mRNA_7349
Organism: Heterodera glycines Gene Locus: chr4:3315538-3317064 Feature type: polypeptideProtein Sequence
Length: 281
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.745 | 1.738 | 0.776 | 1.841 | 0.89 | 1.004 | 0.339 | 1.068 | 1.423 | 1.635 | 0.755 | 1.047 | 1.483 | 1.027 | 0.799 | 0.712 | 1.167 | 0.863 | 0.821 | 1.047 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6953
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-17
|
0.961
|
1.000
|
0.000
|
0.000
|
0.136
|
0.300
|
0.027
|
0.170
|
0.206
|
0.174
|
0.108
|
0.120
|
0.371
|
0.758
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003780
|
2.000
|
1.000
|
Hsc_gene_2320.t1
|
Hsc_gene_2320.t1
|
— |
O17861.1 GILT-like protein F37H8.5 [Caenorhabditis elegans]
|
KAI1727711.1 gamma interferon inducible lysosomal thiol reductase (GILT) domain-containing protein [Ditylenchus destructor]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016671
|
GO:0005575_0.807|GO:0110165_0.807|GO:0005622_0.701|GO:0005737_0.673|GO:0008150_0.668
|
IPR004911+75-272_93-191+
|
— |
PF03227+93-191+Gamma_interferon_inducible_lysosomal_thiol_reductase_(GILT)
|
— |
PTHR13234+75-272+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-281
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.592
|
31982.060
|
6.701
|
1.000
|
20.641
|
12.100
|
44.128
|
55.872
|
11.032
|
9.609
|
49.466
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
639.851
|
9.548
|
947.992
|
953.947
|
867.395
|
388.064
|
673.463
|
684.327
|
391.186
|
809.183
|
630.041
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.404
|
6.504
|
— |
-0.169
|
-1.146
|
0.802
|
0.718
|
— | — | — | — | — | — |