Hg_chrom4_TN10mRNA_7350
Organism: Heterodera glycines Gene Locus: chr4:3317907-3329176 Feature type: polypeptideProtein Sequence
Length: 852
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.119 | 0.901 | 0.982 | 0.769 | 0.841 | 1.715 | 0.685 | 1.643 | 0.991 | 1.301 | 0.676 | 1.036 | 1.109 | 1.083 | 1.629 | 1.174 | 0.981 | 0.569 | 0.722 | 0.38 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6954
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— |
RGRRRRS,KRPLLRHLLSSGRRFGR,RRAPAESLPLELVLKGKAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.284
|
0.222
|
0.025
|
0.632
|
0.141
|
0.241
|
0.152
|
0.052
|
0.576
|
0.128
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001263
|
1.000
|
4.000
|
Hsc_gene_2321.t1;Hsc_gene_2321.t2;Hsc_gene_2321.t3;Hsc_gene_2321.t4
|
Hsc_gene_2321.t1;Hsc_gene_2321.t2;Hsc_gene_2321.t3;Hsc_gene_2321.t4
|
— | — |
KAH7712078.1 PAP2 superfamily protein [Aphelenchus avenae]
|
No
|
-0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0031932
|
GO:0008150_0.955|GO:0005575_0.706|GO:0009987_0.651|GO:0065007_0.627|GO:0050789_0.620|GO:0050794_0.601|GO:0032502_0.595|GO:0048856_0.595|GO:0050896_0.545|GO:0110165_0.536|GO:0051716_0.517
|
IPR008828+154-702+|IPR031567+181-302+
|
— |
PF16978+181-302+SAPK-interacting_protein_1_(Sin1),_middle_CRIM_domain
|
— |
PTHR13335+154-702+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78;116-184;727-852
|
2.000
|
79-115;185-726
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.837
|
94769.230
|
9.023
|
31.000
|
26.174
|
9.507
|
50.939
|
49.061
|
15.728
|
10.446
|
50.469
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
violet
|
649.715
|
601.529
|
444.372
|
371.168
|
250.452
|
371.856
|
401.128
|
351.671
|
586.355
|
1355.672
|
1025.965
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.667
|
-0.834
|
-0.151
|
-0.599
|
0.585
|
— | — |
0.331
|
— | — | — | — | — |
No JSON data available for plots.