Hg_chrom4_TN10mRNA_7357
Organism: Heterodera glycines Gene Locus: chr4:3373824-3384313 Feature type: polypeptideProtein Sequence
Length: 680
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 1.06 | 0.882 | 0.862 | 0.539 | 1.094 | 0.875 | 0.735 | 1.34 | 1.351 | 0.357 | 1.903 | 2.002 | 0.764 | 0.99 | 0.777 | 0.892 | 1.225 | 1.244 | 1.038 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6960
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.062
|
0.176
|
0.013
|
0.142
|
0.373
|
0.531
|
0.343
|
0.007
|
0.730
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003782
|
1.000
|
2.000
|
Hsc_gene_9853.t1;Hsc_gene_9853.t2
|
Hsc_gene_9853.t1;Hsc_gene_9853.t2
|
— |
Q21434.2 NRAMP-like transporter smf-1 [Caenorhabditis elegans]
|
KAI1725896.1 natural resistance-associated macrophage protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0030001|GO:0046873
|
GO:0008150_0.967|GO:0009987_0.866|GO:0005575_0.833|GO:0110165_0.831|GO:0016020_0.755|GO:0051179_0.750|GO:0071944_0.724|GO:0006810_0.719|GO:0051234_0.719|GO:0005886_0.709|GO:0003674_0.655|GO:0006811_0.633|GO:0055085_0.622|GO:0050896_0.613|GO:0006812_0.596|GO:0030001_0.588|GO:0005622_0.571|GO:0005215_0.556|GO:0022857_0.556|GO:0098660_0.547|GO:0043226_0.541|GO:0034220_0.537|GO:0042221_0.523|GO:0000041_0.513|GO:0098655_0.506|GO:0098662_0.501
|
IPR001046+99-594_111-554_121-522_143-525_202-228_232-251_257-278_309-332_437-456_465-482_498-517+
|
— |
PF01566+143-525+Natural_resistance-associated_macrophage_protein-like
|
— |
PTHR11706+99-594+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-680
|
9f6q_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
75359.250
|
6.336
|
-1.000
|
16.765
|
13.824
|
36.471
|
63.529
|
8.676
|
8.088
|
52.206
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1215.521
|
3997.423
|
1688.831
|
1149.272
|
855.734
|
1176.212
|
1371.677
|
1495.224
|
386.259
|
627.819
|
524.293
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.471
|
-1.936
|
-0.448
|
-0.457
|
0.474
|
0.232
|
— | — | — | — | — | — | — |
No JSON data available for plots.