Hg_chrom4_TN10mRNA_7358
Organism: Heterodera glycines Gene Locus: chr4:3394058-3395959 Feature type: polypeptideProtein Sequence
Length: 283
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.822 | 0.904 | 0.964 | 2.193 | 1.001 | 0.815 | 1.136 | 1.413 | 1.57 | 0.907 | 1.231 | 0.831 | 1.374 | 1.155 | 0.865 | 0.757 | 0.811 | 0.535 | 0.544 | 0.831 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6961
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KKPR
|
— | — | — | — | — | — |
0.019
|
— | — |
0.220
|
0.293
|
0.051
|
0.263
|
0.152
|
0.067
|
0.111
|
0.015
|
0.259
|
0.945
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008344
|
1.000
|
1.000
|
Hsc_gene_9857.t1
|
Hsc_gene_9857.t1
|
— |
Q868Z9.2 Papilin [Drosophila melanogaster]
|
KAF7636562.1 BPTI/Kunitz inhibitor domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.570
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0005575_0.818|GO:0110165_0.818|GO:0008150_0.712|GO:0003674_0.631|GO:0009987_0.570
|
IPR000716+65-113_67-109_109-174_120-168_128-158_129-178+|IPR002223+209-271_210-271_211-270+|IPR020901+248-266+|IPR036857+64-111_67-111_109-175_112-176+|IPR036880+207-271_208-273+|IPR052861+205-272+
|
SM00131+209-271+|SM00211+65-113_129-178+
|
PF00014+210-271+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain|PF00086+67-109_120-168+Thyroglobulin_type-1_repeat
|
— |
PTHR47248+205-272+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-283
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
31125.730
|
7.753
|
7.000
|
26.502
|
11.307
|
43.816
|
56.184
|
15.194
|
11.307
|
51.943
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
2243.198
|
528.949
|
2099.823
|
2079.748
|
5042.056
|
4023.567
|
1417.047
|
6520.364
|
56.545
|
1629.750
|
955.519
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.762
|
1.838
|
— |
1.246
|
-0.310
|
-1.496
|
0.599
|
-2.063
|
-3.474
|
5.401
|
2.800
|
— | — |
No JSON data available for plots.