Hg_chrom4_TN10mRNA_7366
Organism: Heterodera glycines Gene Locus: chr4:3442879-3445141 Feature type: polypeptideProtein Sequence
Length: 411
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.877 | 1.075 | 0.973 | 0.671 | 0.892 | 1.123 | 0.695 | 1.703 | 1.135 | 1.315 | 0.774 | 2.004 | 1.014 | 1.029 | 1.043 | 1.008 | 0.957 | 1.217 | 0.561 | 0.716 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6969
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.382
|
0.316
|
0.046
|
0.682
|
0.096
|
0.395
|
0.222
|
0.071
|
0.168
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008347
|
1.000
|
1.000
|
Hsc_gene_9860.t1
|
Hsc_gene_9860.t1
|
— |
P55216.1 Putative cystathionine gamma-lyase 2 [Caenorhabditis elegans]
|
KAH7727312.1 cystathionine gamma-lyase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019346|GO:0030170
|
GO:0008150_0.789|GO:0009987_0.728|GO:0005575_0.699|GO:0110165_0.688|GO:0003674_0.668|GO:0008152_0.649|GO:0044237_0.613|GO:0005622_0.609|GO:0044238_0.580|GO:0005737_0.562|GO:0003824_0.553|GO:0016020_0.511
|
IPR000277+17-410_23-407_29-406_47-405+|IPR015421+27-273+|IPR015422+274-408+|IPR015424+50-407+
|
— |
PF01053+29-406+Cys/Met_metabolism_PLP-dependent_enzyme
|
G3DSA:3.40.640.10:FF:000009+26-273+Cystathionine_gamma-synthase_homolog
|
PTHR11808+23-407+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-17
|
1.000
|
18-411
|
8j6n_L
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
45651.400
|
7.138
|
5.000
|
24.331
|
10.219
|
46.229
|
53.771
|
13.625
|
10.706
|
51.582
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
2553.681
|
11.102
|
34.926
|
21.456
|
9035.274
|
300.644
|
55.543
|
427.731
|
8.772
|
7458.273
|
4265.630
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.421
|
0.814
|
-0.592
|
8.686
|
-4.894
|
-2.429
|
— |
-2.802
|
-9.864
|
— | — | — | — |
No JSON data available for plots.