Hg_chrom4_TN10mRNA_7369
Organism: Heterodera glycines Gene Locus: chr4:3468426-3474175 Feature type: polypeptideProtein Sequence
Length: 648
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.754 | 1.328 | 0.589 | 0.798 | 0.849 | 1.108 | 0.459 | 2.006 | 0.823 | 1.168 | 0.491 | 1.634 | 1.286 | 1.306 | 1.512 | 1.477 | 0.987 | 0.959 | 1.187 | 1.044 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6972
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRSR
|
11-47
|
0.948
|
41-61
|
0.967
|
— | — |
0.000
|
— | — |
0.289
|
0.255
|
0.047
|
0.386
|
0.406
|
0.224
|
0.313
|
0.063
|
0.505
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008348
|
1.000
|
1.000
|
Hsc_gene_9868.t1
|
Hsc_gene_9868.t1
|
— |
Q626N3.1 Transmembrane protein 151 homolog [Caenorhabditis briggsae]
|
KAI1712578.1 TMEM151 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.915|GO:0110165_0.915|GO:0016020_0.860|GO:0005622_0.809|GO:0071944_0.792|GO:0043226_0.778|GO:0005886_0.772|GO:0043229_0.757|GO:0043227_0.734|GO:0043231_0.728|GO:0005737_0.697|GO:0005773_0.624|GO:0012505_0.620|GO:0005783_0.565
|
IPR026767+7-611_15-264_285-392+
|
— |
PF14857+15-264_285-392+TMEM151_family
|
— |
PTHR31893+7-611+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
426-648
|
1.000
|
1-425
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.912
|
73777.810
|
9.062
|
28.000
|
22.994
|
13.735
|
49.383
|
50.617
|
14.660
|
8.333
|
51.080
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
195.857
|
183.516
|
621.635
|
97.179
|
22.128
|
34.068
|
27.768
|
222.997
|
18.218
|
389.728
|
230.510
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.531
|
-1.055
|
-2.568
|
-2.163
|
0.635
|
— |
2.608
|
-2.868
|
— | — | — | — | — |
No JSON data available for plots.