Hg_chrom4_TN10mRNA_7370
Organism: Heterodera glycines Gene Locus: chr4:3476437-3479012 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.777 | 0.811 | 0.37 | 1.103 | 0.242 | 1.416 | 0.727 | 2.616 | 1.098 | 1.964 | 0.352 | 1.71 | 1.534 | 0.894 | 1.068 | 1.038 | 0.905 | 0.749 | 3.354 | 1.197 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6973
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — |
16-45
|
0.891
|
— | — | — | — |
0.000
|
— | — |
0.132
|
0.069
|
0.016
|
0.045
|
0.485
|
0.505
|
0.450
|
0.001
|
0.380
|
0.006
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008349
|
1.000
|
1.000
|
Hsc_gene_9869.t1
|
Hsc_gene_9869.t1;Hsc_gene_9869.t2
|
— |
Q6TCG8.1 Progestin and adipoQ receptor family member 3 [Mus musculus]
|
KAI1732716.1 hemolysin-III related domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.903|GO:0009987_0.679|GO:0005575_0.659|GO:0110165_0.659|GO:0065007_0.640|GO:0050789_0.615|GO:0050896_0.615|GO:0016020_0.610|GO:0005886_0.603|GO:0071944_0.603|GO:0050794_0.602
|
IPR004254+17-292_58-281+
|
— |
PF03006+58-281+Haemolysin-III_related
|
— |
PTHR20855+17-292+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-344
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
39650.380
|
9.478
|
23.000
|
16.279
|
19.186
|
38.081
|
61.919
|
12.791
|
3.488
|
43.895
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
220.183
|
112.771
|
56.389
|
120.065
|
708.141
|
599.842
|
157.807
|
205.830
|
10.054
|
220.445
|
130.277
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.228
|
— |
1.198
|
2.530
|
— |
-1.916
|
-1.655
|
— |
-4.600
|
3.795
|
— | — | — |
No JSON data available for plots.