Hg_chrom4_TN10mRNA_7371
Organism: Heterodera glycines Gene Locus: chr4:3479921-3483412 Feature type: polypeptideProtein Sequence
Length: 468
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.87 | 1.69 | 0.932 | 0.442 | 1.353 | 0.712 | 0.483 | 1.389 | 1.804 | 1.126 | 1.522 | 1.885 | 2.196 | 0.534 | 0.567 | 0.733 | 0.701 | 0.68 | 0.986 | 0.817 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6974
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-Not_Clustered
|
0.832
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — |
0.683
|
0.371
|
0.000
|
— |
0.587
|
0.148
|
0.025
|
0.672
|
0.213
|
0.209
|
0.092
|
0.011
|
0.201
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008350
|
1.000
|
1.000
|
Hsc_gene_9870.t1
|
Hsc_gene_9870.t1;Hsc_gene_9871.t1
|
— | — |
KAI3417518.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.911|GO:0005575_0.738|GO:0110165_0.698|GO:0009987_0.689|GO:0005622_0.631|GO:0003674_0.593|GO:0016020_0.575|GO:0005737_0.573|GO:0043226_0.525|GO:0065007_0.517|GO:0043229_0.516|GO:0050789_0.503
|
IPR000210+301-369_302-399_303-398+|IPR002083+159-288_161-267_163-288_164-288+|IPR008974+145-296+|IPR011333+300-397_300-435+|IPR052664+170-431+
|
SM00061+161-267+|SM00225+302-399+
|
PF00651+303-398+BTB/POZ_domain|PF22486+163-288+MATH_domain
|
— |
PTHR22743+170-431+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-468
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
54081.340
|
7.121
|
4.500
|
28.846
|
14.744
|
48.291
|
51.709
|
15.598
|
13.248
|
41.880
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
305.285
|
15.146
|
50.210
|
50.051
|
23.588
|
38.851
|
26.849
|
11.639
|
334.397
|
1003.700
|
716.856
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.501
|
1.587
|
— |
-1.116
|
0.734
|
— |
-1.841
|
1.345
|
— | — |
-5.218
|
— | — |