Hg_chrom4_TN10mRNA_7378
Organism: Heterodera glycines Gene Locus: chr4:3508938-3510653 Feature type: polypeptideProtein Sequence
Length: 371
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.721 | 1.316 | 1.078 | 1.301 | 0.719 | 0.76 | 0.546 | 0.943 | 1.857 | 1.421 | 0.572 | 1.268 | 2.396 | 1.296 | 1.375 | 0.77 | 0.398 | 0.735 | 2.281 | 0.634 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6980
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.807
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KKRRRPHKK,RRFNCIVDEHFKTRKWKL
|
21-72
|
0.839
|
— | — | — | — |
0.000
|
— | — |
0.320
|
0.370
|
0.052
|
0.403
|
0.627
|
0.187
|
0.258
|
0.008
|
0.200
|
0.264
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000021
|
31.000
|
9.000
|
Hsc_gene_12092.t1;Hsc_gene_13746.t1;Hsc_gene_1386.t1;Hsc_gene_16433.t1;Hsc_gene_20441.t1;Hsc_gene_20629.t1;Hsc_gene_23777.t1;Hsc_gene_2877.t1;Hsc_gene_7671.t1
|
Hsc_gene_21984.t1
|
— | — |
KAI3411078.1 hypothetical protein GPALN_003163 [Globodera pallida]
|
MDA9312117
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
371-371
|
1.000
|
1-370
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
43027.100
|
7.467
|
4.500
|
22.642
|
15.633
|
39.084
|
60.916
|
12.399
|
10.243
|
45.553
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkred
|
155.269
|
9.035
|
14.264
|
42.127
|
141.496
|
124.553
|
59.711
|
105.938
|
4.146
|
489.770
|
281.646
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.085
|
1.676
|
1.718
|
— |
-1.054
|
— |
-0.686
|
-5.640
|
— | — | — | — |
No JSON data available for plots.