Hg_chrom4_TN10mRNA_7388
Organism: Heterodera glycines Gene Locus: chr4:3580463-3585716 Feature type: polypeptideProtein Sequence
Length: 423
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.55 | 1.429 | 0.946 | 1.386 | 0.867 | 0.97 | 0.929 | 1.3 | 1.471 | 0.99 | 1.325 | 1.53 | 1.51 | 0.727 | 0.772 | 1.148 | 0.698 | 0.86 | 0.909 | 0.904 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6990
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.414
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
RRFRFFSYLLDKSGKCGKK
|
50-83
|
0.969
|
36-83
|
0.910
|
1-22
|
0.956
|
1.000
|
0.000
|
0.000
|
0.153
|
0.306
|
0.043
|
0.357
|
0.201
|
0.119
|
0.207
|
0.009
|
0.217
|
0.827
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003785
|
2.000
|
1.000
|
Hsc_gene_9872.t1
|
— | — | — |
KAG8293229.1 Ovochymase-2 [Homalodisca vitripennis]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.947|GO:0003674_0.865|GO:0008152_0.790|GO:0044238_0.784|GO:0005488_0.782|GO:0043170_0.779|GO:0005515_0.737|GO:0003824_0.731|GO:0019538_0.728|GO:0051179_0.718|GO:0051234_0.710|GO:0006810_0.706|GO:0016787_0.695|GO:0140096_0.685|GO:0006508_0.682|GO:0006811_0.676|GO:0006812_0.674|GO:0030001_0.674|GO:0006814_0.670|GO:0008233_0.670|GO:0098772_0.669|GO:0004175_0.661|GO:0004252_0.650|GO:0008236_0.650|GO:0016247_0.650|GO:0017080_0.650|GO:0017171_0.650|GO:0099106_0.650|GO:0141108_0.650
|
IPR001254+218-413_257-412_264-418+|IPR009003+200-418+|IPR033116+364-375+|IPR043504+226-415+|IPR051333+253-402+
|
SM00020+218-413+
|
PF00089+257-412+Trypsin
|
— |
PTHR24260+253-402+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-423
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.890
|
47485.480
|
8.429
|
14.500
|
25.532
|
12.293
|
47.754
|
52.246
|
15.130
|
10.402
|
49.645
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
193.726
|
32.077
|
45.578
|
13.937
|
7.973
|
65.173
|
23.523
|
81.953
|
1.896
|
744.800
|
426.413
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.340
|
-1.600
|
— |
3.057
|
-1.462
|
— |
-1.655
|
-8.803
|
— |
-6.300
|
— | — |