Hg_chrom4_TN10mRNA_7390
Organism: Heterodera glycines Gene Locus: chr4:3591242-3593717 Feature type: polypeptideProtein Sequence
Length: 233
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.549 | 0.798 | 1.249 | 0.148 | 1.144 | 0.88 | 1.022 | 0.644 | 0.858 | 1.45 | 1.04 | 1.01 | 0.954 | 0.99 | 1.139 | 1.41 | 1.126 | 1.04 | 1.651 | 0.379 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6992
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKPR
|
— | — | — | — | — | — |
0.001
|
— | — |
0.406
|
0.420
|
0.012
|
0.542
|
0.252
|
0.329
|
0.203
|
0.036
|
0.114
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000356
|
6.000
|
2.000
|
Hsc_gene_3002.t1;Hsc_gene_3002.t2
|
— | — |
Q6DKB0.1 Cytosolic purine 5'-nucleotidase [Xenopus laevis]
|
KAI6241714.1 5' nucleotidase family [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.785|GO:0005575_0.767|GO:0009987_0.733|GO:0110165_0.732|GO:0003674_0.679|GO:0005622_0.660|GO:0008152_0.595|GO:0044238_0.595|GO:0044237_0.582|GO:0005737_0.576|GO:0006139_0.570|GO:0006793_0.532|GO:0006796_0.532|GO:0003824_0.528|GO:0044281_0.521|GO:0016787_0.520|GO:1901135_0.520|GO:0019637_0.519|GO:0006753_0.516|GO:0009117_0.516|GO:0055086_0.516|GO:0006163_0.512|GO:0009123_0.512|GO:0009126_0.512|GO:0009150_0.512|GO:0009161_0.512|GO:0009167_0.512|GO:0009259_0.512|GO:0019693_0.512|GO:0046037_0.512|GO:0072521_0.512|GO:0016788_0.508
|
IPR008380+15-180_16-151+|IPR023214+9-148+|IPR036412+16-150+
|
— |
PF05761+16-151+5'_nucleotidase_family
|
— |
PTHR12103+15-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
177-233
|
1.000
|
1-176
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
25724.050
|
5.799
|
-1.500
|
27.468
|
8.155
|
51.073
|
48.927
|
13.734
|
13.734
|
52.790
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
364.026
|
88.432
|
101.208
|
99.717
|
148.260
|
121.082
|
140.728
|
114.141
|
283.981
|
1074.539
|
735.729
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.542
|
— | — | — |
0.445
|
— | — | — | — | — |
No JSON data available for plots.