Hg_chrom4_TN10mRNA_7391
Organism: Heterodera glycines Gene Locus: chr4:3604070-3610121 Feature type: polypeptideProtein Sequence
Length: 786
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.302 | 1.006 | 0.902 | 0.483 | 0.933 | 1.598 | 0.803 | 1.908 | 0.707 | 0.911 | 0.501 | 1.048 | 0.565 | 1.419 | 0.779 | 1.218 | 1.689 | 0.964 | 0.685 | 0.412 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6993
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.004
|
— | — |
0.407
|
0.131
|
0.010
|
0.650
|
0.203
|
0.181
|
0.121
|
0.008
|
0.509
|
0.128
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003786
|
1.000
|
2.000
|
Hsc_gene_9874.t1;Hsc_gene_9874.t2
|
— | — |
Q99J45.1 Nuclear receptor-binding protein [Mus musculus]
|
KAH7664949.1 Protein HPO-11, partial [Aphelenchus avenae]
|
No
|
-0.560
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.964|GO:0009987_0.883|GO:0005575_0.697|GO:0110165_0.688|GO:0003674_0.656|GO:0065007_0.608|GO:0050789_0.598|GO:0005622_0.597|GO:0050794_0.548|GO:0008152_0.534|GO:0044237_0.510|GO:0032501_0.508
|
IPR000719+93-451+|IPR001245+131-299+|IPR011009+108-440+|IPR050588+71-774+
|
— |
PF07714+131-299+Protein_tyrosine_and_serine/threonine_kinase
|
G3DSA:3.30.200.20:FF:000607+73-172+Nuclear_receptor-binding_protein_2a
|
PTHR13902+71-774+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-110;328-637;759-786
|
2.000
|
111-327;638-758
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
83620.620
|
5.746
|
-12.000
|
21.501
|
8.142
|
50.891
|
49.109
|
10.941
|
10.560
|
61.196
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
tan
|
1833.721
|
2201.881
|
1355.574
|
1702.750
|
2168.904
|
2307.513
|
3044.012
|
1649.290
|
1861.411
|
1215.248
|
1492.175
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.928
|
-0.508
|
0.437
|
0.317
|
— |
0.410
|
-0.589
|
1.026
|
— | — | — | — | — |
No JSON data available for plots.