Hg_chrom4_TN10mRNA_7394
Organism: Heterodera glycines Gene Locus: chr4:3621929-3624289 Feature type: polypeptideProtein Sequence
Length: 300
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.085 | 1.318 | 0.909 | 1.609 | 0.889 | 0.769 | 0.675 | 1.167 | 1.259 | 1.126 | 0.758 | 0.588 | 1.204 | 0.769 | 1.156 | 1.095 | 0.874 | 0.758 | 2.051 | 1.275 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6995
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.688
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-22
|
0.990
|
1.000
|
0.000
|
0.000
|
0.131
|
0.333
|
0.047
|
0.254
|
0.138
|
0.051
|
0.076
|
0.011
|
0.218
|
0.916
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003787
|
2.000
|
1.000
|
Hsc_gene_9877.t1
|
Hsc_gene_9877.t1
|
— | — |
XP_065223074.1 trypsin-1-like [Planococcus citri]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.796|GO:0003674_0.726|GO:0005575_0.653|GO:0110165_0.653|GO:0003824_0.622|GO:0016787_0.559|GO:0140096_0.547|GO:0008233_0.535
|
IPR001254+50-267_51-265_51-272+|IPR009003+7-272+|IPR043504+43-271+|IPR050430+1-271+
|
SM00020+50-267+
|
PF00089+51-265+Trypsin
|
— |
PTHR24276+1-271+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-300
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
33788.380
|
7.464
|
4.500
|
23.333
|
13.667
|
45.000
|
55.000
|
13.000
|
10.333
|
52.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
109.664
|
7.600
|
5.231
|
16.094
|
19.543
|
56.859
|
43.633
|
41.977
|
2.764
|
406.105
|
233.245
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.948
|
1.734
|
— |
1.558
|
— | — | — |
-7.383
|
— | — | — | — |