Hg_chrom4_TN10mRNA_7395
Organism: Heterodera glycines Gene Locus: chr4:3627341-3638593 Feature type: polypeptideProtein Sequence
Length: 1,268
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.165 | 1.027 | 0.961 | 0.843 | 1.012 | 1.375 | 0.779 | 1.972 | 0.683 | 1.758 | 0.633 | 1.021 | 0.986 | 1.016 | 1.304 | 1.251 | 0.659 | 0.693 | 0.485 | 0.209 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6996
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.321
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
52-74
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.253
|
0.141
|
0.016
|
0.704
|
0.178
|
0.254
|
0.210
|
0.012
|
0.424
|
0.106
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008353
|
1.000
|
1.000
|
Hsc_gene_9879.t1
|
Hsc_gene_9877.t1;Hsc_gene_9879.t1
|
— | — |
KAI1704415.1 F-actin-uncapping protein LRRC16A [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.939|GO:0110165_0.937|GO:0008150_0.831|GO:0009987_0.793|GO:0065007_0.778|GO:0050789_0.763|GO:0005622_0.762|GO:0050794_0.749|GO:0016020_0.748|GO:0071840_0.669|GO:0071944_0.663|GO:0016043_0.662|GO:0005886_0.656|GO:0003674_0.614|GO:0005488_0.586|GO:0043226_0.586|GO:0051128_0.581|GO:0043229_0.562|GO:0044085_0.527|GO:0005737_0.525|GO:0022607_0.517|GO:0044087_0.505
|
IPR001611+443-464_709-728+|IPR011993+8-118+|IPR032675+213-806+|IPR051279+151-821+
|
SM00368+358-385_441-466_537-564_706-733_734-761+
|
PF13516+709-728+Leucine_Rich_repeat
|
— |
PTHR24112+151-821+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1000-1268
|
1.000
|
1-999
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.736
|
138665.170
|
7.041
|
15.000
|
25.868
|
8.833
|
48.423
|
51.577
|
14.511
|
11.356
|
51.341
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1907.055
|
1784.020
|
2079.877
|
2256.057
|
2236.388
|
2794.485
|
2374.699
|
2288.526
|
1490.859
|
1294.952
|
1378.912
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.202
|
0.225
|
— |
0.336
|
-0.225
|
-0.394
|
0.196
|
— | — | — | — | — |
No JSON data available for plots.