SCN Proteipedia

Hg_chrom4_TN10mRNA_7396

Organism: Heterodera glycines Gene Locus: chr4:3640964-3643802 Feature type: polypeptide

Protein Sequence

Length: 650

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.038	1.038	1.315	0.318	1.231	1.065	1.081	0.615	1.402	0.936	1.189	1.448	1.154	0.769	0.879	0.769	1.084	1.026	0.237	0.452	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_6997	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-Not_Clustered	0.504

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRKHKKDLSSNPRALRRLR,RKHKKDLSSNPRALRRLRT	—	—	—	—	—	—	0.000	—	—	0.369	0.283	0.042	0.709	0.195	0.317	0.169	0.135	0.279	0.412

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008354	1.000	1.000	Hsc_gene_9882.t1	Hsc_gene_9882.t1	—	P09446.2 Heat shock protein hsp-1 [Caenorhabditis elegans]	AAN78300.1 heat shock protein 70 A [Heterodera glycines];ACR14811.1 heat shock protein 70 [Heterodera glycines]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0140662	GO:0008150_0.895\|GO:0005575_0.809\|GO:0110165_0.806\|GO:0009987_0.765\|GO:0005622_0.673\|GO:0016020_0.636\|GO:0003674_0.612\|GO:0005737_0.587\|GO:0043226_0.552\|GO:0005488_0.551\|GO:0051179_0.551\|GO:0051234_0.534\|GO:0043229_0.525\|GO:0006810_0.518	IPR013126+7-584_7-614+\|IPR018181+10-17_199-212_336-350+\|IPR029047+387-540_389-545+\|IPR029048+540-621_541-650+\|IPR043129+7-189_193-384+	—	PF00012+7-614+Hsp70_protein	G3DSA:1.20.1270.10:FF:000003+535-650+heat_shock_cognate_71_kDa_protein-like\|G3DSA:2.60.34.10:FF:000002+387-541+Heat_shock_70_kDa\|G3DSA:3.30.30.30:FF:000001+69-124+heat_shock_70_kDa_protein-like\|G3DSA:3.30.420.40:FF:000026+8-193+Heat_shock_protein_70\|G3DSA:3.30.420.40:FF:000028+359-384+heat_shock_70_kDa_protein-like\|G3DSA:3.30.420.40:FF:000135+303-358+Heat_shock_cognate_71_kDa_protein\|G3DSA:3.30.420.40:FF:000172+194-251+Heat_shock_70_kDa_protein\|G3DSA:3.90.640.10:FF:000134+231-314+Heat_shock_cognate_71_kDa_protein	PTHR19375+7-584+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	576-650	1.000	1-575	7kw7_D	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.550	70598.860	5.033	-12.000	28.000	7.231	48.615	51.385	13.385	14.615	53.385

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	brown	32017.810	61914.775	15808.094	56685.726	70005.552	37089.210	41106.033	39090.016	8522.705	13048.612	11108.938

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.198	-0.264	1.950	0.272	-0.901	0.159	—	—	—	2.896	2.587	—	—

No JSON data available for plots.

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