Hg_chrom4_TN10mRNA_7397
Organism: Heterodera glycines Gene Locus: chr4:3650983-3653808 Feature type: polypeptideProtein Sequence
Length: 388
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.659 | 1.439 | 0.89 | 0.444 | 1.546 | 0.529 | 0.92 | 1.804 | 0.687 | 1.08 | 1.64 | 1.213 | 2.005 | 0.843 | 0.473 | 0.515 | 0.761 | 1.172 | 0.595 | 1.364 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6998
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_9883
|
— |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — |
0.974
|
0.448
|
0.000
|
— |
0.341
|
0.271
|
0.058
|
0.321
|
0.328
|
0.300
|
0.247
|
0.020
|
0.134
|
0.709
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008355
|
1.000
|
1.000
|
Hsc_gene_9883.t1
|
— | — | — |
KAI6217250.1 Tartrate-resistant acid phosphatase type 5 [Aphelenchoides besseyi]
|
No
|
0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0005575_0.817|GO:0110165_0.817|GO:0003674_0.798|GO:0008150_0.667|GO:0005622_0.625|GO:0005737_0.625|GO:0016020_0.599|GO:0003824_0.575|GO:0009987_0.522
|
IPR004843+57-284+|IPR029052+51-377_56-304+|IPR051558+45-366+
|
— |
PF00149+57-284+Calcineurin-like_phosphoesterase
|
— |
PTHR10161+45-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-388
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
44312.450
|
6.863
|
3.000
|
30.928
|
16.237
|
47.423
|
52.577
|
16.753
|
14.175
|
46.134
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
1142.309
|
16.828
|
505.594
|
250.794
|
67.299
|
57.591
|
58.016
|
140.971
|
4991.541
|
842.533
|
2620.680
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.681
|
3.760
|
-0.904
|
-1.929
|
— | — |
1.183
|
-1.137
|
— |
-4.136
|
— | — |
6.003
|