Hg_chrom4_TN10mRNA_7398
Organism: Heterodera glycines Gene Locus: chr4:3685092-3686476 Feature type: polypeptideProtein Sequence
Length: 260
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.626 | 0.626 | 0.21 | 1.194 | 0.385 | 0.789 | 0.824 | 0.385 | 1.282 | 0.832 | 0.932 | 1.357 | 2.991 | 4.068 | 0.628 | 0.824 | 0.504 | 0.874 | 0.296 | 1.131 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_6999
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.692
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus|chloroplast
|
KKKR,PPPPPPPPPPPPPPPPPPPPPPPPPPPPP
|
— | — |
37-83
|
0.985
|
1-22
|
0.504
|
0.583
|
0.000
|
0.000
|
0.114
|
0.046
|
0.020
|
0.100
|
0.176
|
0.136
|
0.111
|
0.002
|
0.063
|
0.843
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003788
|
1.000
|
2.000
|
Hsc_gene_11976.t1;Hsc_gene_9885.t1
|
— | — | — | — |
MCH7876487
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR051412+187-231+
|
— | — | — |
PTHR45691+187-231+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-260
|
9ya0_IC
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.973
|
28664.040
|
9.867
|
16.000
|
13.462
|
15.769
|
28.077
|
71.923
|
10.000
|
3.462
|
55.385
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
white
|
42.842
|
10.728
|
61.300
|
10.509
|
12.642
|
247.670
|
2.437
|
128.507
|
0.000
|
9.760
|
5.577
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.285
|
— |
-2.432
|
— |
4.313
|
-6.659
|
-1.058
|
-5.577
|
— |
4.250
|
— | — | — |