Hg_chrom4_TN10mRNA_7401
Organism: Heterodera glycines Gene Locus: chr4:3692032-3697265 Feature type: polypeptideProtein Sequence
Length: 585
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 1.193 | 1.243 | 0.707 | 0.712 | 1.008 | 0.712 | 1.026 | 0.836 | 1.271 | 0.907 | 1.81 | 1.472 | 0.953 | 0.767 | 0.855 | 0.953 | 0.907 | 2.235 | 1.81 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7002
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.920
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-24
|
0.919
|
0.996
|
0.000
|
0.000
|
0.247
|
0.160
|
0.048
|
0.309
|
0.331
|
0.211
|
0.129
|
0.019
|
0.293
|
0.889
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008357
|
1.000
|
1.000
|
Hsc_gene_9887.t1
|
Hsc_gene_9887.t1
|
— |
O62146.2 Putative phospholipase B-like 2 [Caenorhabditis elegans]
|
KAI1709797.1 phospholipase B domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004620
|
GO:0005575_0.863|GO:0110165_0.863|GO:0016020_0.608|GO:0043226_0.544|GO:0043227_0.529|GO:0005622_0.518|GO:0005737_0.518
|
IPR007000+77-579_87-576+
|
— |
PF04916+87-576+Phospholipase_B
|
— |
PTHR12370+77-579+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-585
|
3fgt_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.598
|
67242.550
|
6.238
|
-2.000
|
22.906
|
16.410
|
43.761
|
56.239
|
11.795
|
11.111
|
49.402
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1480.117
|
472.817
|
893.902
|
2179.826
|
2421.412
|
1888.230
|
3266.751
|
609.166
|
296.847
|
1853.336
|
1186.269
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
2.067
|
1.395
|
0.119
|
-0.343
|
0.801
|
-1.742
|
2.567
|
-2.781
|
— | — | — | — |