Hg_chrom4_TN10mRNA_7405
Organism: Heterodera glycines Gene Locus: chr4:3710148-3715926 Feature type: polypeptideProtein Sequence
Length: 546
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.703 | 1.022 | 0.866 | 0.695 | 1.282 | 1.08 | 0.85 | 0.733 | 1.099 | 1.634 | 0.888 | 2.047 | 1.933 | 1.021 | 1.196 | 0.523 | 0.841 | 0.805 | 0.986 | 0.7 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7006
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.764
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.095
|
0.277
|
0.023
|
0.125
|
0.940
|
0.145
|
0.169
|
0.059
|
0.168
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008360
|
1.000
|
1.000
|
Hsc_gene_9892.t1
|
Hsc_gene_9891.t1;Hsc_gene_9892.t1
|
— |
Q92088.1 Cytochrome P450 2M1 [Oncorhynchus mykiss]
|
WBS97804.1 cytochrome p450 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.850|GO:0003674_0.705|GO:0009987_0.654|GO:0003824_0.591|GO:0005575_0.589|GO:0110165_0.589|GO:0016020_0.532|GO:0016491_0.507
|
IPR001128+38-539_336-353_401-412_482-491_491-502+|IPR002401+67-86_91-112_192-210_325-342_345-371_446-470_481-491_491-514+|IPR017972+484-493+|IPR036396+28-545_31-546+|IPR050182+23-522+
|
— |
PF00067+38-539+Cytochrome_P450
|
G3DSA:1.10.630.10:FF:000036+31-546+CYtochrome_P450_family
|
PTHR24300+23-522+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-546
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
62318.230
|
6.505
|
0.000
|
25.641
|
12.088
|
43.040
|
56.960
|
13.187
|
12.454
|
43.773
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
3208.682
|
928.463
|
8362.433
|
1189.931
|
412.229
|
252.225
|
562.190
|
3890.089
|
553.076
|
7774.090
|
4679.370
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.943
|
0.220
|
-2.705
|
-1.561
|
-0.696
|
1.170
|
3.851
|
-2.648
|
-3.909
|
— |
-3.725
|
— | — |
No JSON data available for plots.