Hg_chrom4_TN10mRNA_7408
Organism: Heterodera glycines Gene Locus: chr4:3743085-3746763 Feature type: polypeptideProtein Sequence
Length: 535
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.782 | 1.261 | 0.884 | 0.773 | 1.028 | 1.342 | 0.623 | 1.308 | 0.415 | 1.389 | 0.68 | 1.759 | 1.817 | 0.575 | 1.64 | 1.041 | 0.889 | 0.935 | 2.013 | 0.825 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7008
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.946
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
RHRR
|
3-32
|
0.986
|
— | — | — | — |
0.000
|
— | — |
0.071
|
0.099
|
0.005
|
0.203
|
0.268
|
0.222
|
0.884
|
0.011
|
0.175
|
0.306
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008361
|
1.000
|
1.000
|
Hsc_gene_9894.t1
|
Hsc_gene_9894.t1
|
— | — |
KAI1732555.1 core-2/I-Branching enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016757
|
GO:0003674_0.871|GO:0008150_0.734|GO:0003824_0.724|GO:0016740_0.687|GO:0016757_0.657|GO:0016758_0.657|GO:0008194_0.650|GO:0008375_0.650|GO:0005575_0.535|GO:0110165_0.534
|
IPR003406+165-440+
|
— |
PF02485+165-440+Core-2/I-Branching_enzyme
|
— |
PTHR46671+49-503+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
534-535
|
1.000
|
1-533
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
62087.560
|
8.586
|
15.000
|
26.168
|
14.579
|
49.533
|
50.467
|
15.140
|
11.028
|
46.355
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
magenta
|
171.791
|
56.777
|
135.233
|
72.049
|
178.526
|
201.996
|
961.054
|
37.733
|
1.382
|
134.287
|
77.328
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.018
|
— |
-0.796
|
1.278
|
— |
2.261
|
-2.538
|
4.818
|
— |
6.036
|
— | — | — |
No JSON data available for plots.