SCN Proteipedia

Hg_chrom4_TN10mRNA_7422

Organism: Heterodera glycines Gene Locus: chr4:3809887-3816538 Feature type: polypeptide

Protein Sequence

Length: 510

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.866	0.775	0.891	0.811	1.601	0.804	0.514	1.078	1.176	1.192	2.05	1.499	1.307	0.679	0.8	0.84	0.9	0.891	1.207	0.461	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7022	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.943

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KKKR,KRRP,KKSTKHIEAVEEELKCEKK	—	—	—	—	—	—	0.000	—	—	0.336	0.314	0.007	0.497	0.205	0.145	0.138	0.008	0.335	0.294

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003790	2.000	1.000	Hsc_gene_10387.t1	—	—	P00529.1 Tyrosine-protein kinase transforming protein ros [UR2 sarcoma virus]	KAI1712633.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004713\|GO:0005524\|GO:0006468	GO:0005575_0.903\|GO:0008150_0.903\|GO:0110165_0.903\|GO:0009987_0.866\|GO:0065007_0.815\|GO:0050789_0.797\|GO:0050794_0.762\|GO:0003674_0.757\|GO:0016020_0.756\|GO:0005622_0.755\|GO:0050896_0.746\|GO:0051716_0.691\|GO:0007154_0.676\|GO:0023052_0.674\|GO:0005488_0.666\|GO:0005515_0.666\|GO:0003824_0.613\|GO:0007165_0.603\|GO:0005886_0.601\|GO:0071944_0.601\|GO:0140096_0.584\|GO:0008152_0.579\|GO:0044237_0.579\|GO:0044238_0.579\|GO:0016740_0.577\|GO:0043170_0.574\|GO:0048518_0.569\|GO:0032502_0.563\|GO:0048856_0.563\|GO:0071840_0.558\|GO:0048522_0.557\|GO:0016772_0.548\|GO:0016043_0.546\|GO:0032501_0.545\|GO:0019538_0.530\|GO:0005737_0.529\|GO:0016301_0.525\|GO:0016773_0.525\|GO:0043226_0.523\|GO:0004672_0.521\|GO:0043229_0.514	IPR000719+190-486+\|IPR001245+190-480_277-290_388-398_407-429_452-474+\|IPR008266+333-345+\|IPR011009+172-479+\|IPR020635+190-481+\|IPR050122+137-484+	SM00219+190-481+	PF07714+190-480+Protein_tyrosine_and_serine/threonine_kinase	—	PTHR24416+137-484+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	97-166	2.000	1-96;167-510	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.711	58227.560	9.343	20.500	34.118	10.000	51.961	48.039	19.608	14.510	43.137

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	467.029	576.571	883.815	448.605	308.382	295.836	103.671	562.937	568.617	424.359	486.184

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.387	-0.499	-0.870	-0.573	—	-1.502	0.826	-2.298	—	—	—	—	—

No JSON data available for plots.

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