Hg_chrom4_TN10mRNA_7425
Organism: Heterodera glycines Gene Locus: chr4:3834787-3838204 Feature type: polypeptideProtein Sequence
Length: 474
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.687 | 1.472 | 0.499 | 1.018 | 0.703 | 1.298 | 0.402 | 0.633 | 1.547 | 1.54 | 0.639 | 1.241 | 1.524 | 1.217 | 1.119 | 1.447 | 0.899 | 0.863 | 1.947 | 0.683 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7025
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRRK,KRKERQLVLLQESKDRMK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.102
|
0.112
|
0.015
|
0.152
|
0.120
|
0.352
|
0.193
|
0.021
|
0.886
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008370
|
1.000
|
1.000
|
Hsc_gene_9910.t1
|
Hsc_gene_9910.t1
|
— |
Q18534.1 Neuropeptide receptor npr-1 [Caenorhabditis elegans]
|
KAF7637651.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.919|GO:0009987_0.893|GO:0065007_0.857|GO:0050789_0.841|GO:0050794_0.832|GO:0050896_0.806|GO:0005575_0.791|GO:0023052_0.788|GO:0110165_0.787|GO:0007154_0.780|GO:0051716_0.774|GO:0003674_0.747|GO:0007165_0.736|GO:0016020_0.723|GO:0060089_0.709|GO:0038023_0.695|GO:0007186_0.690|GO:0071944_0.674|GO:0005886_0.669|GO:0004888_0.660|GO:0004930_0.577|GO:0005488_0.533|GO:0032501_0.506
|
IPR000276+80-104_95-371_114-135_159-181_165-181_193-214_250-273_305-329_353-379+|IPR017452+95-371+
|
— |
PF00001+95-371+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24235+67-410+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
472-474
|
1.000
|
1-471
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.916
|
53800.360
|
9.034
|
16.000
|
17.932
|
11.603
|
44.937
|
55.063
|
10.970
|
6.962
|
48.945
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
108.973
|
80.071
|
276.376
|
130.612
|
86.023
|
71.369
|
138.806
|
186.239
|
36.505
|
85.816
|
64.683
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.557
|
0.569
|
-0.972
|
-0.632
|
— |
0.969
|
1.284
|
— | — | — | — | — | — |
No JSON data available for plots.