Hg_chrom4_TN10mRNA_7431
Organism: Heterodera glycines Gene Locus: chr4:3860165-3868135 Feature type: polypeptideProtein Sequence
Length: 381
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.946 | 1.587 | 0.907 | 1.358 | 0.919 | 0.74 | 0.906 | 1.575 | 1.108 | 0.638 | 0.835 | 0.772 | 1.094 | 0.959 | 1.339 | 1.2 | 0.688 | 0.676 | 2.221 | 1.467 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7031
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
lysosome_vacuole
|
— | — |
1-21
|
0.983
|
4-34
|
0.990
|
— | — |
0.002
|
— | — |
0.129
|
0.045
|
0.142
|
0.155
|
0.430
|
0.676
|
0.421
|
0.009
|
0.129
|
0.463
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008372
|
1.000
|
1.000
|
Hsc_gene_9916.t1
|
Hsc_gene_9916.t1;Hsc_gene_9919.t1
|
— |
Q6PN98.1 Cathepsin Z [Onchocerca volvulus]
|
AVA09687.1 putative effector protein [Heterodera avenae];AVA09729.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0008150_0.808|GO:0005575_0.774|GO:0110165_0.767|GO:0003674_0.596|GO:0016020_0.556|GO:0005622_0.543|GO:0005737_0.533
|
IPR000668+140-358_140-377_164-179_317-327_334-340+|IPR013128+98-354+|IPR025661+334-353+|IPR033157+140-379+|IPR038765+118-356+
|
SM00645+140-377+
|
PF00112+140-358+Papain_family_cysteine_protease
|
G3DSA:3.90.70.10:FF:000060+107-380+Cathepsin_Z
|
PTHR12411+98-354+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-381
|
1ef7_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.907
|
43073.180
|
8.211
|
12.000
|
25.722
|
14.961
|
48.031
|
51.969
|
15.223
|
10.499
|
53.543
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
5222.945
|
1504.810
|
4508.521
|
3730.723
|
4781.000
|
5994.252
|
7078.384
|
6245.710
|
1962.749
|
8687.046
|
5805.205
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.355
|
1.173
|
-0.166
|
0.326
|
0.341
|
0.251
|
— |
0.322
|
-2.242
|
— | — | — | — |
No JSON data available for plots.