Hg_chrom4_TN10mRNA_7435
Organism: Heterodera glycines Gene Locus: chr4:3880535-3884876 Feature type: polypeptideProtein Sequence
Length: 524
(Signal peptide: 1-15)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.533 | 2.13 | 0.625 | 0.329 | 0.732 | 1.37 | 0.818 | 1.336 | 1.484 | 1.186 | 0.983 | 1.908 | 1.484 | 1.248 | 0.701 | 1.172 | 1.001 | 0.867 | 0.147 | 0.561 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7035
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
3-Not_Clustered
|
0.927
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
chloroplast
|
KKVELHKNEQQRPAKK
|
— | — |
36-65
|
0.986
|
1-15
|
0.951
|
0.578
|
0.000
|
0.000
|
0.436
|
0.138
|
0.008
|
0.451
|
0.346
|
0.168
|
0.079
|
0.112
|
0.124
|
0.230
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003783
|
3.000
|
0.000
|
0.000
|
— | — | — |
KAI3417076.1 Ran-binding protein 9 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.956|GO:0003674_0.863|GO:0032502_0.763|GO:0048856_0.763|GO:0003824_0.709|GO:0009653_0.696|GO:0048646_0.683|GO:0051703_0.678|GO:0140096_0.677|GO:0016740_0.676|GO:0030435_0.670|GO:0030587_0.670|GO:0043934_0.670|GO:0099120_0.670|GO:0016772_0.659|GO:0016301_0.656|GO:0016773_0.655|GO:0004672_0.654|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+342-520+|IPR003877+434-516+|IPR013320+405-519+|IPR043136+352-521+|IPR044736+393-515+
|
— |
PF00622+434-516+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
88-242;523-524
|
2.000
|
1-87;243-522
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.957
|
58079.410
|
9.694
|
18.000
|
20.420
|
10.115
|
49.237
|
50.763
|
12.595
|
7.824
|
51.527
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
red
|
252.738
|
19.559
|
26.683
|
15.219
|
12.430
|
19.063
|
22.495
|
20.875
|
0.000
|
1054.607
|
602.632
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.698
|
— | — | — | — | — |
-22.963
|
4.785
|
— | — | — |