Hg_chrom4_TN10mRNA_7436
Organism: Heterodera glycines Gene Locus: chr4:3889514-3892232 Feature type: polypeptideProtein Sequence
Length: 273
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.511 | 1.107 | 1.199 | 0.632 | 0.916 | 1.409 | 0.741 | 0.733 | 2.279 | 0.941 | 1.332 | 1.508 | 2.544 | 0.775 | 0.822 | 0.89 | 0.661 | 0.777 | 0.564 | 0.539 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7036
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
12-Not_Clustered
|
0.373
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-21
|
0.990
|
0.999
|
0.000
|
0.000
|
0.299
|
0.105
|
0.008
|
0.687
|
0.147
|
0.106
|
0.051
|
0.051
|
0.153
|
0.589
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002051
|
3.000
|
1.000
|
Hsc_gene_9921.t1
|
Hsc_gene_9921.t1
|
— |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
KAI3407415.1 Ran-binding protein 10 [Globodera pallida]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.749|GO:0005575_0.680|GO:0110165_0.675|GO:0005622_0.617|GO:0005737_0.570
|
IPR001870+54-265+|IPR003877+127-264_130-262+|IPR013320+122-265+|IPR043136+55-271+|IPR044736+124-261+|IPR050618+45-271+
|
SM00449+127-264+
|
PF00622+130-262+SPRY_domain
|
— |
PTHR12864+45-271+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-273
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
31266.170
|
8.029
|
4.000
|
26.374
|
13.187
|
46.886
|
53.114
|
14.286
|
12.088
|
43.223
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
139.194
|
11.107
|
9.024
|
4.091
|
2.498
|
1.499
|
28.162
|
2.218
|
0.000
|
586.999
|
335.428
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.579
|
-1.037
|
— | — |
4.233
|
— |
3.809
|
— | — | — | — | — |