Hg_chrom4_TN10mRNA_7437
Organism: Heterodera glycines Gene Locus: chr4:3892780-3896817 Feature type: polypeptideProtein Sequence
Length: 492
(Signal peptide: 1-14)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.496 | 2.08 | 0.739 | 0.28 | 0.678 | 1.147 | 0.774 | 1.829 | 1.536 | 1.209 | 1.047 | 2.033 | 1.355 | 1.212 | 0.498 | 1.19 | 1.1 | 0.801 | 0.313 | 0.777 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7037
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.488
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
chloroplast
|
— | — | — |
34-63
|
0.986
|
1-14
|
0.942
|
0.967
|
0.000
|
0.000
|
0.446
|
0.181
|
0.005
|
0.393
|
0.386
|
0.219
|
0.080
|
0.132
|
0.091
|
0.210
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003783
|
3.000
|
0.000
|
0.000
|
— | — | — |
KAI3421820.1 SPRY domain-containing protein 3 [Globodera pallida]
|
No
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR043136+325-492+|IPR044736+366-489+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
89-235
|
2.000
|
1-88;236-492
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.930
|
54750.520
|
9.104
|
15.000
|
21.138
|
11.585
|
49.593
|
50.407
|
13.008
|
8.130
|
51.220
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
magenta
|
19.927
|
5.551
|
22.103
|
13.041
|
8.001
|
14.655
|
27.838
|
12.977
|
40.810
|
17.510
|
27.496
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.765
|
1.098
|
-0.649
|
— |
0.893
|
0.929
|
— |
1.238
|
— | — | — | — | — |