Hg_chrom4_TN10mRNA_7440
Organism: Heterodera glycines Gene Locus: chr4:3904940-3908379 Feature type: polypeptideProtein Sequence
Length: 211
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 1.543 | 0.517 | 0.654 | 0.79 | 0.851 | 1.185 | 1.185 | 1.79 | 1.153 | 0.862 | 0.836 | 1.843 | 0.82 | 0.387 | 0.812 | 1.243 | 0.934 | 0.365 | 1.673 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7040
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
14-Not_Clustered
|
0.898
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-21
|
0.993
|
1.000
|
0.000
|
0.000
|
0.566
|
0.194
|
0.026
|
0.532
|
0.191
|
0.186
|
0.117
|
0.061
|
0.168
|
0.367
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008376
|
1.000
|
1.000
|
Hsc_gene_9924.t1
|
— | — | — |
KAI3417076.1 Ran-binding protein 9 [Globodera pallida]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.932|GO:0003674_0.873|GO:0003824_0.785|GO:0032502_0.706|GO:0048856_0.706|GO:0016740_0.689|GO:0009653_0.678|GO:0048646_0.676|GO:0030435_0.670|GO:0030587_0.670|GO:0043934_0.670|GO:0051703_0.670|GO:0099120_0.670|GO:0140096_0.666|GO:0016772_0.658|GO:0016301_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650|GO:0016773_0.650
|
IPR003877+89-200_124-198+|IPR013320+41-200+|IPR043136+22-208+|IPR044736+79-197+
|
SM00449+89-200+
|
PF00622+124-198+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-211
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
23261.630
|
7.318
|
2.500
|
17.536
|
15.166
|
40.758
|
59.242
|
9.953
|
7.583
|
51.185
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
36.744
|
17.975
|
3.393
|
30.046
|
13.480
|
4.508
|
14.612
|
1.374
|
24.878
|
110.075
|
73.562
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.643
|
0.606
|
3.266
|
-1.186
|
-1.566
|
1.711
|
-1.819
|
3.557
|
— | — | — | — | — |