Hg_chrom4_TN10mRNA_7455
Organism: Heterodera glycines Gene Locus: chr4:3966761-3972459 Feature type: polypeptideProtein Sequence
Length: 539
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 1.338 | 0.945 | 0.448 | 1.391 | 0.618 | 0.574 | 1.02 | 1.402 | 1.454 | 1.209 | 2.401 | 1.391 | 0.856 | 0.984 | 0.742 | 0.669 | 1.181 | 0.856 | 0.6 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7055
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_9939;Hsc_gene_9937
|
— |
Hg_chrom4_TN10mRNA_7455
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-22
|
0.972
|
1.000
|
0.000
|
0.000
|
0.506
|
0.235
|
0.074
|
0.681
|
0.165
|
0.127
|
0.135
|
0.022
|
0.132
|
0.229
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002055
|
2.000
|
2.000
|
Hsc_gene_9937.t1;Hsc_gene_9939.t1
|
Hsc_gene_9939.t1
|
— |
P35668.1 Glutathione synthetase [Xenopus laevis]
|
KAI1710607.1 eukaryotic glutathione synthase, ATP binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016874
|
GO:0008150_0.941|GO:0003674_0.856|GO:0008152_0.783|GO:0009987_0.751|GO:0005575_0.706|GO:0110165_0.700|GO:0050896_0.671|GO:0044237_0.638|GO:0003824_0.637|GO:0009058_0.626|GO:0044249_0.608|GO:0006790_0.552|GO:0043603_0.550|GO:0006518_0.547|GO:0006575_0.547|GO:0006749_0.547|GO:0006750_0.547|GO:0019184_0.547|GO:0042398_0.547|GO:0043043_0.547|GO:0043604_0.547|GO:0044272_0.547|GO:0016874_0.536|GO:0004363_0.531|GO:0016879_0.531|GO:0016881_0.531|GO:1904091_0.531|GO:0005622_0.526|GO:0005737_0.508
|
IPR005615+23-539_35-539_46-538+|IPR014042+110-394+|IPR014049+46-480+|IPR014709+395-467+|IPR037013+231-358+
|
— |
PF03917+46-538+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— |
PTHR11130+35-539+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-539
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.574
|
61367.360
|
6.723
|
1.500
|
28.386
|
10.204
|
45.826
|
54.174
|
14.842
|
13.544
|
45.083
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1487.732
|
16.622
|
24.937
|
2742.847
|
1104.152
|
132.902
|
180.321
|
64.677
|
1316.594
|
3921.460
|
2805.089
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
7.231
|
6.895
|
-1.344
|
-3.040
|
0.451
|
-1.149
|
1.623
|
— | — |
-1.632
|
— | — |