Hg_chrom4_TN10mRNA_7456
Organism: Heterodera glycines Gene Locus: chr4:3979631-3984612 Feature type: polypeptideProtein Sequence
Length: 703
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.662 | 1.158 | 0.75 | 1.472 | 1.754 | 0.657 | 0.796 | 1.28 | 0.759 | 0.827 | 0.69 | 1.757 | 0.632 | 1.505 | 0.987 | 1.28 | 1.959 | 0.539 | 0.985 | 0.251 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7056
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.895
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
PGHRPQRP
|
— | — | — | — | — | — |
0.009
|
— | — |
0.100
|
0.078
|
0.062
|
0.177
|
0.112
|
0.088
|
0.202
|
0.024
|
0.270
|
0.916
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008385
|
1.000
|
1.000
|
Hsc_gene_9940.t1
|
Hsc_gene_9940.t1;Hsc_gene_9940.t2;Hsc_gene_9940.t3
|
— | — |
KAI6177185.1 ShKT domain-containing protein [Aphelenchoides bicaudatus]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003582+356-391_356-392_357-391_618-654_619-653_668-703_669-703+|IPR052660+169-583+
|
SM00254+356-392_618-654_668-703+
|
PF01549+356-391_619-653_668-703+ShK_domain-like
|
— |
PTHR16021+169-583+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9;137-357;407-603
|
3.000
|
10-136;358-406;604-703
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.557
|
76854.370
|
4.689
|
-28.000
|
26.600
|
6.970
|
55.050
|
44.950
|
11.949
|
14.651
|
58.037
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
red
|
149.192
|
19.487
|
214.169
|
155.856
|
127.990
|
102.955
|
101.199
|
99.074
|
10.730
|
336.893
|
197.109
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.230
|
2.865
|
-0.349
|
-0.315
|
— | — | — | — |
-5.037
|
3.962
|
— | — | — |
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